User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO]. For example, it can convert from fasta to phylip, remove gaps from a fasta-formatted sequence, and describe all FASTA files in the current directory. Requires Biopython. | * [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO]. For example, it can convert from fasta to phylip, remove gaps from a fasta-formatted sequence, and describe all FASTA files in the current directory. Requires Biopython. | ||
* see also on | * see also earlier on this page 'Binder'/notebook-related items as I usually have worked out Python code to shuttle other command-line based software output to Python and notebook-related items [https://github.com/fomightez/sequencework here] as I sometimes demonstrate script usage in launchable notebooks | ||
==My own sequence work-related code== | ==My own sequence work-related code== | ||
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* [https://github.com/fomightez/UGENE_help Working with UGENE software analysis software] | * [https://github.com/fomightez/UGENE_help Working with UGENE software analysis software] | ||
* [https://github.com/fomightez/yeastmine Working with Yeastmine] | * [https://github.com/fomightez/yeastmine Working with Yeastmine] | ||
* see also on | * see also earlier on this page 'Binder'/notebook-related items as I usually have worked out Python code to shuttle other command-line based software output to Python and notebook-related items [https://github.com/fomightez/sequencework here] as I sometimes demonstrate script usage in launchable notebooks | ||
