6il0: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 6il0 is ~~ON HOLD until Paper Publication~~

==K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae==

~~Authors~~: ~~Lee~~, I.H., ~~Kang~~, L.W.

== Structural highlights ==

<table><tr><td colspan='2'>[[6il0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IL0 OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IL0 FirstGlance].

~~Description~~: ~~K3U complex structure~~ of ~~peptide deformylase from Xanthomonas oryzae pv~~. ~~oryzae~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>

[[Category: Kang, L.W]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </td></tr>

[[Category: Lee, I.H]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6il0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6il0 OCA], [http://pdbe.org/6il0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6il0 RCSB], [http://www.ebi.ac.uk/pdbsum/6il0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6il0 ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Peptide deformylase]]

[[Category: Kang, L W]]

[[Category: Lee, I H]]

[[Category: Hydrolase]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6il0 is ON HOLD  until Paper Publication
+==K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae==
+<StructureSection load='6il0' size='340' side='right'caption='[[6il0]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
-Authors: Lee, I.H., Kang, L.W.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6il0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IL0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IL0 FirstGlance]. <br>
-Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
-[[Category: Kang, L.W]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-[[Category: Lee, I.H]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6il0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6il0 OCA], [http://pdbe.org/6il0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6il0 RCSB], [http://www.ebi.ac.uk/pdbsum/6il0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6il0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Peptide deformylase]]
+[[Category: Kang, L W]]
+[[Category: Lee, I H]]
+[[Category: Hydrolase]]