3fm4: Difference between revisions
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==Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii== | ==Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii== | ||
<StructureSection load='3fm4' size='340' side='right' caption='[[3fm4]], [[Resolution|resolution]] 2.11Å' scene=''> | <StructureSection load='3fm4' size='340' side='right'caption='[[3fm4]], [[Resolution|resolution]] 2.11Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3fm4]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3fm4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Boletus_of_the_steppes Boletus of the steppes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FM4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FM4 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2boq|2boq]], [[3fjw|3fjw]], [[3fkg|3fkg]], [[3fm1|3fm1]], [[3fm6|3fm6]], [[3fmu|3fmu]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2boq|2boq]], [[3fjw|3fjw]], [[3fkg|3fkg]], [[3fm1|3fm1]], [[3fm6|3fm6]], [[3fmu|3fmu]]</div></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPL2 ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPL2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5323 Boletus of the steppes])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Versatile_peroxidase Versatile peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.16 1.11.1.16] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fm4 OCA], [https://pdbe.org/3fm4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fm4 RCSB], [https://www.ebi.ac.uk/pdbsum/3fm4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fm4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[[ | [[https://www.uniprot.org/uniprot/VPL2_PLEER VPL2_PLEER]] A versatile ligninolytic peroxidase that combines the substrate specificity characteristics of the two other ligninolytic peroxidases, manganese peroxidase and lignin peroxidase.<ref>PMID:9987124</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Boletus of the steppes]] | [[Category: Boletus of the steppes]] | ||
[[Category: Large Structures]] | |||
[[Category: Versatile peroxidase]] | [[Category: Versatile peroxidase]] | ||
[[Category: Choinowski, T]] | [[Category: Choinowski, T]] | ||
Revision as of 07:40, 10 November 2021
Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii
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Proteopedia Page Contributors and Editors (what is this?)
Categories:
- Boletus of the steppes
- Large Structures
- Versatile peroxidase
- Choinowski, T
- Martinez, A T
- Piontek, K
- Plattner, D A
- Electron transfer
- Heme
- Hydrogen peroxide
- Iron
- Lignin degradation
- Lignin peroxidase
- Manganese
- Manganese peroxidase
- Metal-binding
- Mn-independent oxidation phenolic non-phenolic aromatic
- Mnii oxidation
- Oxidoreductase
- Peroxidase
- Polyvalent peroxidase
- Protoporphyrin ix
- Secreted
- Zymogen
