6dnt: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
Line 1: Line 1:


==UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid==
==UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid==
<StructureSection load='6dnt' size='340' side='right' caption='[[6dnt]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
<StructureSection load='6dnt' size='340' side='right'caption='[[6dnt]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metrm Metrm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DNT FirstGlance]. <br>
<table><tr><td colspan='2'>[[6dnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanobrevibacter_ruminantium_M1 Methanobrevibacter ruminantium M1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DNT FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPZ:(2R)-2-{[(2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL]OXY}PROPANOIC+ACID'>EPZ</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mru_1413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=634498 METRM])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPZ:(2R)-2-{[(2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL]OXY}PROPANOIC+ACID'>EPZ</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnt OCA], [http://pdbe.org/6dnt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnt RCSB], [http://www.ebi.ac.uk/pdbsum/6dnt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnt OCA], [https://pdbe.org/6dnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dnt RCSB], [https://www.ebi.ac.uk/pdbsum/6dnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnt ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/D3E402_METRM D3E402_METRM]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Metrm]]
[[Category: Large Structures]]
[[Category: Carbone, V]]
[[Category: Methanobrevibacter ruminantium M1]]
[[Category: Ronimus, R S]]
[[Category: Carbone V]]
[[Category: Sang, C]]
[[Category: Ronimus RS]]
[[Category: Schofield, L R]]
[[Category: Sang C]]
[[Category: Sutherland-Smith, A J]]
[[Category: Schofield LR]]
[[Category: 4-epimerase]]
[[Category: Sutherland-Smith AJ]]
[[Category: Sugar binding protein]]
[[Category: Udp-n-acetylglucosamine]]
[[Category: Udp-n-acetylmuramic acid]]
[[Category: Wbpp]]
Retrieved from "https://proteopedia.org/6dnt"