Sandbox Reserved 1501: Difference between revisions

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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
Encoded in the ''Saccharomyces cerevisiae'' (strain ATCC 204508 / S288c) gene CYB2 the protein Flavocytochrome b(2)
It is an Oxidoreductase categorized according to IUB as EC: 1.1.2.3.


== Function ==
== Function ==
Flavocytochrome b(2) (Arg289Lys mutant) from ''Saccharomyces cerevisiae'' is an oxidoreductase that couples dehydrogenation of L-lactate to cytochrome c reduction by electron transfer. It is one step of the bacterial lactate metabolic pathway.
Similar oxidants that can be used to perform the reaction in vitro are ferricyanide, phenozine methosulfate and quinone [experiment first performed 1963 by Nygaard, later in 1966 described by Symons and Burgoyne]. 
The Yeasts L-Lactate Dehydrogenase can be inhibited by heavy metals, oxygen, glycerate, oxalate, malate, phenylpyruvate and fatty acids [Nygaard 1963].
The Enzyme shows a specificity for L-lactate but none for the D-isomer or -hydroxybutyrate.


== Relevance ==
== Relevance ==
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== Structural highlights ==
== Structural highlights ==
Global Symmetry Cyclic - C4
Global Stoichiometry Homotetramer  A4
Flavocytochrome b(2) is a tetrameric enzyme [Jacq and Lederer, 1972]. Each of the four identical subunits is composed by one single polypeptide chain.
Each subunit contains a binding site for the selectively non-covalently binding of the cofactor FM3- (FlavinMonoNucleotide), 
https://www.wikiwand.com/de/Flavinmononukleotid
as well as one in with the iron complexed in the tetrapyrrole ring interacts with heme b(2-) cofactor [Risler and Groudinsky, 1973]. 
https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:60344
The amino acid sequence in the heme binding region was first determined by Guidard et al. (1974).
For every subunit the crystallized preparation analysis determined a molecular weight of the chain of 36 kD [Appleby and Morton] and the chain of 21 kD [Jacq and Lederer, 1974].
Arginin 289 to Lysine
http://www.worthington-biochem.com/yldhs/