Introduction to Jmol: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Jaime Prilusky (talk | contribs)
Eric Martz (talk | contribs)
No edit summary
 
Line 1: Line 1:
=== '''Jmol Introduction''' ===
== What is Jmol? ==
== What is Jmol? ==
Jmol is an open-source program that allows the viewer to see chemical structures in three dimensions.  Jmol previously used Java, but has now switched to HTML5-only.
Jmol is a free, open-source program that allows the viewer to see chemical structures in three dimensions.  Jmol previously used Java, but has now switched to HTML5-only.
[[Image:Jmol.png|325px|right|thumb| <span style="font-size:1.2em;"></span>]]
[[Image:Jmol.png|325px|right|thumb| <span style="font-size:1.2em;"></span>]]
What makes this program very useful is Jmol's ability to manipulate the 3D models and display the molecules as "ball and stick," "space filling," "ribbon," "cartoon," etc.  One can also do a combination of any or all possible displays.  For example: one can display a ligand as "ball and stick" while displaying the protein its interacting with in a "cartoon" display.
What makes this program very useful is Jmol's ability to manipulate the 3D models and display the molecules as "ball and stick," "space filling," "ribbon," "cartoon," etc.  One can also do a combination of any or all possible displays.  For example: one can display a ligand as "ball and stick" while displaying the protein its interacting with in a "cartoon" display.