Jmol/Index: Difference between revisions
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====Technical==== | ====Technical==== | ||
=====JSmol in Proteopedia===== | |||
*[[How JSmol Works]] | *[[How JSmol Works]] | ||
*[[Superposition with jmol]]: How to superimpose two structures in Jmol and show them in Proteopedia. | *[[Superposition with jmol]]: How to superimpose two structures in Jmol and show them in Proteopedia. | ||
*[[Jmol/Visualizing membrane position]] for integral membrane proteins. | *[[Jmol/Visualizing membrane position]] for integral membrane proteins. | ||
*[[User:James D Watson/Using Jmol]] for the more technically minded. A guide to using Jmol's menu. Compared to using [[FirstGlance in Jmol]], this is slow and cumbersome, and the Jmol menu lacks any help or explanation. | *[[User:James D Watson/Using Jmol]] for the more technically minded. A guide to using Jmol's menu. Compared to using [[FirstGlance in Jmol]], this is slow and cumbersome, and the Jmol menu lacks any help or explanation. | ||
*[[Jmol/Synchronization]] | *[[Jmol/Synchronization]] | ||
*[[Jmol/Visualizing large molecules]] | *[[Jmol/Visualizing large molecules]] | ||
*[[JSmol/Rotation Speeds]] for models of various sizes and in different web browsers. | |||
=====Using Jmol with Java===== | |||
*[[Distinguishing the modes of Jmol on Proteopedia]]: How to tell if Jmol is using Java or not. | |||
*[[Using Java for Rendering Structures]]: How to force Proteopedia to use the faster Jmol_S signed Java applet instead of its default, which is the slower JSmol. | *[[Using Java for Rendering Structures]]: How to force Proteopedia to use the faster Jmol_S signed Java applet instead of its default, which is the slower JSmol. | ||
*[[Jmol/Application]]: How to use the stand-alone Java application, in contrast to Jmol within a web browser. | |||
=====Conversion===== | |||
*[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]] | *[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]] | ||
*[[User:Eric Martz/JSmol Notes]] includes speed comparisons for Jmol_S (Java applet) vs. JSmol and partial notes about converting web resources from Jmol_S to JSmol. | *[[User:Eric Martz/JSmol Notes]] includes speed comparisons for Jmol_S (Java applet) vs. JSmol and partial notes about converting web resources from Jmol_S to JSmol. | ||
