Avidin 3D structures: Difference between revisions

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New page: == 3D structures of Avidin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Avidin **3fdc, 2jgs, [[2c4i...
 
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**[[3t2w]] – SdAV (mutant) + biotin
**[[3t2w]] – SdAV (mutant) + biotin


* Streptavidin  
*Streptavidin full length


**[[2bc3]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]] - StrAv - ''Streptomyces avidinii''<br />
**[[2bc3]], [[5vcq]], [[5n8t]] – StrAv - ''Streptomyces avidinii''<br />
**[[3mm0]], [[3pk2]], [[3rds]], [[3rdx]],  [[3re5]], [[3re6]], [[4gjv]] - StrAv (mutant) <br />
**[[2qcb]] – StrAv+ biotin derivative <br />
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]] - StrAv core<br />
**[[4dne]] - StrAv (mutant)+biotin derivative<br />
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws]], [[2y3e]], [[3t6l]]  - StrAv core (mutant)<br />
**[[5n99]], [[5n8w]], [[5n8j]], [[5n8e]], [[5n8b]], [[5n89]], [[5n7x]] - StrAv + peptide<br />
**[[4jnj]] – StrAv/rhizavidin<br />
**[[4jo6]] – StrAv + SBP-TAG<br />


*''Streptavidin binary complexes''
*Streptavidin core residues 38-183
 
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]], [[4jnj]] - StrAv  <br />
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws,]] [[2y3e]], [[3t6l]], [[4bx6]], [[4bx5]], [[3mm0]], [[3pk2]], [[3rds]], [[3rdx]], [[3re5]], [[3re6]], [[4gjv]],[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]] [[1n7y]], [[1n9y]] - StrAv  (mutant) <br />
**[[1rst]], [[1rsu]], [[4jo6]] - StrAv  + strep-tag II peptide<br />
**[[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv  (mutant) + strep-tag II peptide<br />
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg, [[4gda]], [[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]] - StrAv  +biotin<br />
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]], [[6aul]], [[4yvb]], [[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], 2y3f, [[3t6f]], [[3wyq]] - StrAv  (mutant)+biotin<br />
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]], [[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]], [[5jd2]], [[5vkx]], [[5vl5]], [[5vl8]], [[5wba]], [[6anx]], [[6gh7]], [[4irw]], [[2wpu]], [[4cpf]], [[4cpe]], [[3wyp]], [[5wbc]], [[5l3y]], [[5k68]], [[5k67]]  – StrAv  +biotin derivative<br />
**[[1nc9]], [[3rdq]], [[6auc]], [[6aue]], [[6auh]], [[6auo]], [[6fh8]], [[6fry]], [[1rxh]], [[5wbb]], [[5wbd]], [[6ess]], [[6esu]], [[6gmi]], [[5f2b]], [[5cse]], [[4oka]], [[4cpi]], [[4cph]], [[4bx7]], [[3x00]], [[3wzq]], [[3wzp]], [[3wzn]], [[3wzo]] - StrAv  (mutant)+biotin derivative<br />
**[[3rdu]], [[5to2]] - StrAv  (mutant) + PEG<br />
**[[1pts]], [[1sld]], [[1sle]], [[1slg]], [[1str]], [[1sts]], [[1vwa]], [[1vwb]], [[1vwc]], [[1vwd, [[1vwe]], [[1vwf]], [[1vwg]], [[1vwh]], [[1vwi]], [[1vwj]], [[1vwk]], [[1vwl]], [[1vwm]], [[1vwn]], [[1vwo]], [[1vwp]], [[1vwq]], [[1vwr]], [[2g5l]] - StrAv  + peptide<br />
**[[1slf]] - StrAv  + SO4<br />
**[[1sre]], [[1srf]], [[1srg]], [[1srh]], [[1sri]], [[1srj]] - StrAv  + benzoic acid ligands<br />
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV  +glycouril<br />
**[[6avk]] – StrAv  + oxazole derivative<br />
**[[5b5g]], [[5b5f]], [[4y5d]], [[4y59]] – StrAv  + pyridine derivative<br />
 
*Streptavidin residues 1-129


**[[1rxh]] – StrAv (mutant)+ biotinyl p-nitroaniline<br />
**[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]], [[1n7y]], [[1n9y]], [[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv (mutant) + strep-tag II peptide<br />
**[[1rst]], [[1rsu]] - StrAv  + strep-tag II peptide<br />
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]] - StrAv (mutant)+biotin<br />
**[[1nc9]], [[3rdq]], [[4dne]] - StrAv (mutant)+biotin derivative<br />
**[[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]] - StrAv +iminobiotin<br />
**[[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]] - StrAv core+biotin<br />
**[[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], [[2y3f]], [[3t6f]]  - StrAv core (mutant) + biotin<br />
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg]] - StrAv +biotin<br />
**[[3rdu]] - StrAv (mutant) + PEG<br />
**[[1hqq]], [[1hxl]] – StrAv + MP-2 (mutant)<br />
**[[1hy2]] - StrAv + MP-1 <br />
**[[1hy2]] - StrAv + MP-1 <br />
**[[1hxz]] - StrAv + MP-2<br />
**[[hxz]] - StrAv + MP-2<br />
**[[1pts]], [[1sld]], [[1sle]], [[1slg]], [[1str]], [[1sts]], [[1vwa]], [[1vwb]], [[1vwc]], [[1vwd]], [[1vwe]], [[1vwf]], [[1vwg]], [[1vwh]], [[1vwi]], [[1vwj]], [[1vwk]], [[1vwl]], [[1vwm]], [[1vwn]], [[1vwo]], [[1vwp]], [[1vwq]], [[1vwr]], [[2g5l]] - StrAv + peptide<br />
**[[1hqq]], [[1hxl]] – StrAv + MP-2 (mutant) <br />
**[[1slf]] - StrAv + SO4<br />
 
**[[1sre]], [[1srf]], [[1srg]], [[1srh]], [[1sri]], [[1srj]] - StrAv + benzoic acid ligands<br />
*Rhizavidin
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]] – StrAv+biotin derivative<br />
 
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV+glycouril<br />
**[[3ew1]] – RhiAv – ''Rhizobium etli''<br />
**[[2qcb]], [[2wpu]] – StrAv+Ru ligand
**[[3ew2]] – RhiAV+biotin
 
*Xenavidin
 
**[[2uz2]], [[2uyw]] – XenAv – frog
 
*Tamavidin
 
**[[2zsc]] – TanAv – Tamogitake mushroom
 
*Bradavidin
 
**[[4ggr]], [[4ggt]] – BjAv – ''Bradyrhizobium japonicum''<br />
**[[4ggz]] – BjAv + biotin<br />
 
* Hoefavidin
 
**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
**[[4z27]] – HpAv short <br />
**[[4z28]] – HpAv short + biotin <br />
**[[4z2p]], [[4z2v]], [[4z2o]] – HpAv short + peptide <br />
 
* Shwanavidin
 
**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />
**[[3t2x]] – SdAv (mutant)<br />
**[[3szj]] – SdAv + biotin<br />
**[[3t2w]] – SdAv (mutant) + biotin<br />


* Rhizavidin  
* Rhizavidin  
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