6c3r: Difference between revisions

Latest revision as of 11:04, 30 October 2024

Cricket paralysis virus RNAi suppressor protein CrPV-1A

Structural highlights

6c3r is a 2 chain structure with sequence from Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.6Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

POLN_CRPVC Protein 1A functions as a suppressor of RNA-mediated gene silencing, an antiviral defense mechanism of insect cells. Inhibits siRNA function, but does not interfere with miRNA pathway. Does not bind to dsRNA or siRNA.^[1] RNA-directed RNA polymerase replicates genomic and antigenomic RNA.[PROSITE-ProRule:PRU00539]^[2]

Publication Abstract from PubMed

The dicistrovirus, Cricket paralysis virus (CrPV) encodes an RNA interference (RNAi) suppressor, 1A, which modulates viral virulence. Using the Drosophila model, we combined structural, biochemical, and virological approaches to elucidate the strategies by which CrPV-1A restricts RNAi immunity. The atomic resolution structure of CrPV-1A uncovered a flexible loop that interacts with Argonaute 2 (Ago-2), thereby inhibiting Ago-2 endonuclease-dependent immunity. Mutations disrupting Ago-2 binding attenuates viral pathogenesis in wild-type but not Ago-2-deficient flies. CrPV-1A also contains a BC-box motif that enables the virus to hijack a host Cul2-Rbx1-EloBC ubiquitin ligase complex, which promotes Ago-2 degradation and virus replication. Our study uncovers a viral-based dual regulatory program that restricts antiviral immunity by direct interaction with and modulation of host proteins. While the direct inhibition of Ago-2 activity provides an efficient mechanism to establish infection, the recruitment of a ubiquitin ligase complex enables CrPV-1A to amplify Ago-2 inactivation to restrict further antiviral RNAi immunity.

A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability.,Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006. PMID:30308158^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Nayak A, Berry B, Tassetto M, Kunitomi M, Acevedo A, Deng C, Krutchinsky A, Gross J, Antoniewski C, Andino R. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nat Struct Mol Biol. 2010 May;17(5):547-54. doi: 10.1038/nsmb.1810. Epub 2010 Apr, 18. PMID:20400949 doi:https://dx.doi.org/10.1038/nsmb.1810
↑ Nayak A, Berry B, Tassetto M, Kunitomi M, Acevedo A, Deng C, Krutchinsky A, Gross J, Antoniewski C, Andino R. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nat Struct Mol Biol. 2010 May;17(5):547-54. doi: 10.1038/nsmb.1810. Epub 2010 Apr, 18. PMID:20400949 doi:https://dx.doi.org/10.1038/nsmb.1810
↑ Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R. A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability. Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006. PMID:30308158 doi:https://dx.doi.org/10.1016/j.chom.2018.09.006

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Nayak A, Berry B, Tassetto M, Kunitomi M, Acevedo A, Deng C, Krutchinsky A, Gross J, Antoniewski C, Andino R. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nat Struct Mol Biol. 2010 May;17(5):547-54. doi: 10.1038/nsmb.1810. Epub 2010 Apr, 18. PMID:20400949 doi:https://dx.doi.org/10.1038/nsmb.1810

[2] Nayak A, Berry B, Tassetto M, Kunitomi M, Acevedo A, Deng C, Krutchinsky A, Gross J, Antoniewski C, Andino R. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nat Struct Mol Biol. 2010 May;17(5):547-54. doi: 10.1038/nsmb.1810. Epub 2010 Apr, 18. PMID:20400949 doi:https://dx.doi.org/10.1038/nsmb.1810

[3] Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R. A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability. Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006. PMID:30308158 doi:https://dx.doi.org/10.1016/j.chom.2018.09.006

[1]

[2]

[3]

@@ Line 3: / Line 3: @@
 <StructureSection load='6c3r' size='340' side='right'caption='[[6c3r]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6c3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Crpvc Crpvc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C3R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C3R FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6c3r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricket_paralysis_virus_Teleogryllus_commodus/Australia/CrPVVIC/1968 Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C3R FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928300 CRPVC])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c3r OCA], [http://pdbe.org/6c3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c3r RCSB], [http://www.ebi.ac.uk/pdbsum/6c3r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c3r ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c3r OCA], [https://pdbe.org/6c3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c3r RCSB], [https://www.ebi.ac.uk/pdbsum/6c3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c3r ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/POLN_CRPVC POLN_CRPVC]] Protein 1A functions as a suppressor of RNA-mediated gene silencing, an antiviral defense mechanism of insect cells. Inhibits siRNA function, but does not interfere with miRNA pathway. Does not bind to dsRNA or siRNA.<ref>PMID:20400949</ref>   RNA-directed RNA polymerase replicates genomic and antigenomic RNA.[PROSITE-ProRule:PRU00539]<ref>PMID:20400949</ref>
+[https://www.uniprot.org/uniprot/POLN_CRPVC POLN_CRPVC] Protein 1A functions as a suppressor of RNA-mediated gene silencing, an antiviral defense mechanism of insect cells. Inhibits siRNA function, but does not interfere with miRNA pathway. Does not bind to dsRNA or siRNA.<ref>PMID:20400949</ref>   RNA-directed RNA polymerase replicates genomic and antigenomic RNA.[PROSITE-ProRule:PRU00539]<ref>PMID:20400949</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Crpvc]]
+[[Category: Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968]]
 [[Category: Large Structures]]
-[[Category: Andino, R]]
+[[Category: Andino R]]
-[[Category: Gross, J]]
+[[Category: Gross J]]
-[[Category: Kim, D Y]]
+[[Category: Kim DY]]
-[[Category: Nayak, A]]
+[[Category: Nayak A]]
-[[Category: Rnai inhibitor]]
-[[Category: Viral protein]]

6c3r: Difference between revisions

Latest revision as of 11:04, 30 October 2024

Cricket paralysis virus RNAi suppressor protein CrPV-1A

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools