Clp Protease 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Newer edit →
Michal Harel (talk | contribs)
32,831 edits
New page: ==3D structures of Clp protease== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *CLP P subunit **1tg6 - ClpP...
 
Michal Harel (talk | contribs)
32,831 edits
No edit summary
Line 4: Line 4:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|


*CLP P subunit
*Clp P subunit


**[[1tg6]] - ClpP – human<br />
**[[1tg6]] - hClpP – human<br />
**[[1tyf]], [[1yg6]] – EcClpP – ''Escherichia coli''<br />
**[[1tyf]], [[1yg6]] – EcClpP – ''Escherichia coli''<br />
**[[1yg8]], [[3hln]] - EcClpP (mutant)<br />
**[[1yg8]], [[3hln]] - EcClpP (mutant) <br />
**[[2ds6]] - EcClpP Zinc-binding domain<br />
**[[1y7o]] – SpClpP – ''Streptococcus pneumonia''<br />
**[[1y7o]] – ClpP – ''Streptococcus pneumoniae''<br />
**[[2f6i]], [[4gm2]], [[4hnk]] – ClpP  – ''Plasmodium falciparum''<br />
**[[2f6i]], [[4gm2]], [[4hnk]] - CLP – ''Plasmodium falciparum''<br />
**[[2cby]], [[2ce3]], [[2c8t]], [[4u0h]], [[5e0s]], [[5dzk]] - MtClpP – ''Mycobacterium tuberculosis''<br />
**[[2cby]], [[2ce3]], [[2c8t]], [[4u0h]], [[5e0s]], [[5dzk]] - MtCLP – ''Mycobacterium tuberculosis''<br />
**[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br />
**[[3fes]] - CdClpC – ''Clostridium difficile''<br />
**[[6mx2]] – CdClpP1 <br />
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
**[[3p2l]], [[5g1s]], [[5g1r]], [[5g1q]] - ClpP – ''Francisella tulerensis''<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
**[[3v5i]], [[4emp]], [[5c90]] - SaClpP (mutant)<br />
**[[3v5i]], [[4emp]], [[5c90]], [[6dkf]] - SaClpP (mutant) <br />
**[[2zl0]] - HpClpP – ''Helicobacter pylori''<br />
**[[2zl0]] - HpClpP – ''Helicobacter pylori''<br />
**[[2zl3]] - HpClpP (mutant)<br />
**[[2zl3]] - HpClpP (mutant) <br />
**[[4jcq]], [[4jct]], [[4ryf]] – LmClpP – ''Listeria monocytogenes''<br />
**[[4jcq]], [[4jct]], [[4ryf]] – LmClp – ''Listeria monocytogenes''<br />
**[[4jcr]] - LmClpP (mutant)<br />
**[[6sfx]] - LmClpP – Cryo EM<br />
**[[4jcr]] - LmCLP (mutant)<br />
**[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br />
**[[6naq]] – NmClpP – ''Neisseria meningitidis''<br />
**[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br />
**[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br />
**[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br />


*''CLP P subunit complex''
*Clp P subunit binary complex


**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
Line 31: Line 34:
**[[6bba]] - hClpP + ADEP-28<br />
**[[6bba]] - hClpP + ADEP-28<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
**[[6ppe]] – EcClpP + ClpX – Cryo EM<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
Line 36: Line 40:
**[[3tt7]] - BsClpP + DFP<br />
**[[3tt7]] - BsClpP + DFP<br />
**[[4u0g]] – MtClpP + ADEP + agonist<br />
**[[4u0g]] – MtClpP + ADEP + agonist<br />
**[[5dl1]] – SaClpP + inhibitor<br />
**[[5dl1]], [[6l40]] – SaClpP + inhibitor<br />
**[[5w18]], [[5vz2]] – SaClpP + peptide<br />
**[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br />
**[[5dkp]] – ClpP + ADEP – ''Neisseria meningitidis''<br />
**[[5dkp]] – NmClpP + ADEP <br />
**[[6nah]] - NmClpP + ADEP-14<br />
**[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
**[[7dfu]] – ClpP + ADEP-4 – ''Xanthomonas oryzae''<br />
**[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br />


*CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100
*Clp regulatory subunit or ClpX
 
**[[6pba]] - MtClp N-terminal domain<br />
**[[3hte]], [[4i34]], [[[4i5o]], [4i63]] , [[4i9k]]- EcClp <br />
**[[3hws]], [[4i4l]] - EcClp + ADP<br />
**[[4i81]] - EcClp + ATPgS <br />
**[[6pp5]] - EcClp + ADP – Cryo EM<br />
**[[6pp6]], [[6pp7]], [[6pp8]] - EcClp + ADP + ATPgS – Cryo EM<br />
**[[6sfw]] - LmClp – Cryo EM<br />
**[[6lsy]] - SpClp – Cryo EM<br />
**[[6lt4]] - SpClp + ATPgS – Cryo EM<br />
 
*CLP C
 
**[[5gui]] – ClpC1 N terminal – ''Arabidopsis thaliana'' <br />
**[[3fes]] - CdClpC <br />
**[[6pbq]] - MtClp N-terminal domain<br />
**[[6pbs]] - MtClp N-terminal domain + ecumicin<br />
**[[6cn8]] - MtClp N-terminal domain + rufomycin<br />
**[[6em8]], [[6em9]] - SaClp – Cryo EM<br />
 
CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100


}}
}}
Retrieved from "https://proteopedia.org/Clp_Protease_3D_structures"