User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* http://emboss.sourceforge.net/ - shuffleseq from EMBOSS shuffles a set of sequences maintaining composition. | * http://emboss.sourceforge.net/ - shuffleseq from EMBOSS shuffles a set of sequences maintaining composition. | ||
==Extract physico-chemical data from Protein or DNA sequences== | |||
* [https://www.iitm.ac.in/bioinfo/SBFE/index.html Seq2Feature webserver] is a comprehensive web-based feature extraction tool which computes protein and DNA sequence driven features. It can calculate 252 protein- based and 42 DNA- based descriptors. Major protein sequence based descriptors include physico-chemical, energetic and conformational properties, mutation matrices and contact potentials. There is a corresponding article [https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btz432/5499130?redirectedFrom=fulltext here]. | |||
==Orthology== | ==Orthology== | ||
