DNA methyltransferase 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Newer edit →
Michal Harel (talk | contribs)
32,831 edits
New page: == 3D Structures of DNA methyltransferase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Methylguanine DNMT *...
 
Michal Harel (talk | contribs)
32,831 edits
No edit summary
Line 5: Line 5:


*Methylguanine DNMT
*Methylguanine DNMT
**[[1sfe]] – O6-methylguanine DNMT C terminal – ''Escherichia coli''


**[[1qnt]], [[1eh6]], [[3llr]] - hO6-methylguanine DNMT – human
**[[1qnt]], [[1eh6]], [[3llr]] - hO6-methylguanine DNMT – human
Line 25: Line 23:
**[[4bhb]], [[4bhc]], [[4wxd]], [[4wxc]] - MtO6-methylguanine DNMT (mutant) – ''Mycobacterium tuberculosis''<br />
**[[4bhb]], [[4bhc]], [[4wxd]], [[4wxc]] - MtO6-methylguanine DNMT (mutant) – ''Mycobacterium tuberculosis''<br />
**[[4wx9]] - MtO6-methylguanine DNMT (mutant) + modified DNA<br />
**[[4wx9]] - MtO6-methylguanine DNMT (mutant) + modified DNA<br />
**[[4zyg]], [[4zye]] - O6-methylguanine DNMT – ''Sulfolobus solfataricus''<br />
**[[4zyg]], [[4zye]], [[6ga0]] - SsO6-methylguanine DNMT – ''Sulfolobus solfataricus''<br />
**[[5llq]], [[4zyh]] - O6-methylguanine DNMT (mutant) <br />
**[[5llq]], [[4zyh]] - SsO6-methylguanine DNMT (mutant) <br />
**[[4zyd]] - O6-methylguanine DNMT (mutant) + modified DNA<br />
**[[4zyd]] - SsO6-methylguanine DNMT (mutant) + modified DNA<br />
**[[1sfe]] – O6-methylguanine DNMT C terminal – ''Escherichia coli''<br />


*Methylcytosine DNMT
*Methylcytosine DNMT; Domains – RFTS 351-599; ADD 476-611; PWWP 206-355


**[[3epz]] - h-cytosine DNMT 1 replication foci-targeting sequence
**[[3epz]] - h-cytosine DNMT 1 replication foci-targeting sequence
Line 43: Line 42:
**[[4qbr]], [[4qbs]] - h-cytosine DNMT 3A ADD domain (mutant) + histone H3<br />
**[[4qbr]], [[4qbs]] - h-cytosine DNMT 3A ADD domain (mutant) + histone H3<br />
**[[4u7p]] - h-cytosine DNMT 3A residues 455-912 + h-cytosine DNMT 3-like residues 178-379  + SAH<br />
**[[4u7p]] - h-cytosine DNMT 3A residues 455-912 + h-cytosine DNMT 3-like residues 178-379  + SAH<br />
**[[6pa7]] - h-cytosine DNMT 3A residues 224-912 + h-cytosine DNMT 3B residues 1-770  + SAH + histones + DNA – Cryo EM<br />
**[[4u7t]] - h-cytosine DNMT 3A residues 455-912 + h-cytosine DNMT 3-like residues 178-379  + histone 3.3 + SAH<br />
**[[4u7t]] - h-cytosine DNMT 3A residues 455-912 + h-cytosine DNMT 3-like residues 178-379  + histone 3.3 + SAH<br />
**[[6w89]], [[6w8b]], [[6w8d]], [[6w6j]] - h-cytosine DNMT 3A residues 628-912 + h-cytosine DNMT 3L residues 178-386  + DNA + SAH + inhibitor<br />
**[[6f57]], [[5yx2]], [[6brr]] - h-cytosine DNMT 3A residues 628-912 + h-cytosine DNMT 3-like residues 178-379  + DNA + SAH + pyrimidine derivative<br />
**[[6f57]], [[5yx2]], [[6brr]] - h-cytosine DNMT 3A residues 628-912 + h-cytosine DNMT 3-like residues 178-379  + DNA + SAH + pyrimidine derivative<br />
**[[3flg]] - h-cytosine DNMT 3B PWWP domain<br />
**[[3flg]] - h-cytosine DNMT 3B PWWP domain<br />
**[[6r3e]] - h-cytosine DNMT 3B PWWP domain + inhibitor<br />
**[[3qkj]] - h-cytosine DNMT 3B residues 293-442<br />
**[[3qkj]] - h-cytosine DNMT 3B residues 293-442<br />
**[[5nvo]] - h-cytosine DNMT 3B PWWP domain + choline<br />
**[[5nvo]] - h-cytosine DNMT 3B PWWP domain + choline<br />
**[[5nv7]], [[5nv2]], [[5nv0]], [[5nrv]], [[5nrs]], [[5nrr]], [[5nr3]] - h-cytosine DNMT 3B PWWP domain + inhibitor<br />
**[[5nv7]], [[5nv2]], [[5nv0]], [[5nrv]], [[5nrs]], [[5nrr]], [[5nr3]] - h-cytosine DNMT 3B PWWP domain + inhibitor<br />
**[[5ciu]] - h-cytosine DNMT 3B residues 206-355 + histone H3.2<br />
**[[5ciu]] - h-cytosine DNMT 3B residues 206-355 + histone H3.2<br />
**[[6u8p]], [[6u8v]], [[6u8w]], [[6u8x]], [[6u90]], [[6u91]] - h-cytosine DNMT 3B residues 563-853 + h-cytosine DNMT 3L residues 178-386  + DNA + SAH + inhibitor<br />
**[[3swr]] - h-cytosine DNMT + sinefungin<br />
**[[6pzv]] - cytosine DNMT 1 RFTS domain + histone H3.3 + ubiquitin - bovine<br />
**[[3av4]], [[1khc]] - m-cytosine DNMT – mouse<br />
**[[3av4]], [[1khc]] - m-cytosine DNMT – mouse<br />
**[[5wy1]] - m-cytosine DNMT (mutant) <br />
**[[5wy1]] - m-cytosine DNMT (mutant) <br />
**[[5guv]], [[5gut]] - m-cytosine DNMT residues 731-1600 (mutant) <br />
**[[5guv]], [[5gut]] - m-cytosine DNMT residues 731-1600 (mutant) <br />
**[[3pt6]], [[3pt9]], [[4da4]] – m-cytosine DNMT + DNA
**[[6w8v]], [[6w8w]] - m-cytosine DNMT1 residues 731-1600 + SAH + CMP derivative<br />
**[[3pt6]], [[3pt9]], [[4da4]] – m-cytosine DNMT residues 650-1602 + DNA
   
   
**[[3av5]] - m-cytosine DNMT + SAH
**[[3av5]] - m-cytosine DNMT + SAH residues 291-1620


**[[3av6]] - m-cytosine DNMT + SAM
**[[3av6]] - m-cytosine DNMT + SAM residues 291-1620
 
**[[3swr]] - h-cytosine DNMT + sinefungin


**[[4fsx]] – c-cytosine DNMT + SAH – corn<br />
**[[4ft2]], [[4ft4]] – c-cytosine DNMT + histone H3 peptide<br />
**[[6fdf]] - cytosine DNMT2 + SAH – fission yeast<br/>
**[[1boo]] - cytosine DNMT (mutant) – ''Proteus vulgaris''<br />
**[[1boo]] - cytosine DNMT (mutant) – ''Proteus vulgaris''<br />
**[[3qv2]] - cytosine DNMT + SAH – ''Entamoeba histolytica''<br />
**[[3qv2]] - cytosine DNMT + SAH – ''Entamoeba histolytica''<br />
Line 76: Line 83:


**[[1svu]] - Hh-cytosine DNMT (mutant)<br />
**[[1svu]] - Hh-cytosine DNMT (mutant)<br />
**[[4fsx]] – c-cytosine DNMT + SAH – corn<br />
**[[4ft2]], [[4ft4]] – c-cytosine DNMT + histone H3 peptide<br />
**[[4h0n]] - cytosine DNMT (mutant) – ''Spodoptera frugiperda''<br/>
**[[4h0n]] - cytosine DNMT (mutant) – ''Spodoptera frugiperda''<br/>
**[[6fdf]] - cytosine DNMT2 + SAH – fission yeast<br/>


*Methyladenine DNMT
*Methyladenine DNMT


**[[6ped]] – hN6AMT1 + tRNA methyltransferase<br />
**[[6h1d]] – hN6AMT1 + TRMT112<br />
**[[6kmr]], [[6kms]] – hN6AMT1 + TRMT112 + SAM<br />
**[[6h1e]] – hN6AMT1 + TRMT112 + SAH + histone H4 peptide<br />
**[[6khs]] – hN6AMT1 + TRMT112 + SAH + methylGln<br />
**[[1nw5]] – RsN6-adenine DNMT + SAM – ''Rhodobacter sphaeroides''
**[[1nw5]] – RsN6-adenine DNMT + SAM – ''Rhodobacter sphaeroides''


Line 90: Line 99:
**[[5hek]] - HpN6-adenine DNMT – ''Helicobacter pylori''<br />
**[[5hek]] - HpN6-adenine DNMT – ''Helicobacter pylori''<br />
**[[5hfj]] - HpN6-adenine DNMT + SAM<br />
**[[5hfj]] - HpN6-adenine DNMT + SAM<br />
 
**[[6k0w]] - HpN6-adenine DNMT + sinefungin<br />
**[[2ibs]], [[2ibt]], [[2ih2]], [[2ih4]], [[2ih5]], [[2np6]], [[2np7]], [[1g38]] - Ta-adenine DNMT Taqi + DNA + cofactor analog – ''Thermus aquaticus''<br />
**[[2ibs]], [[2ibt]], [[2ih2]], [[2ih4]], [[2ih5]], [[2np6]], [[2np7]], [[1g38]] - Ta-adenine DNMT Taqi + DNA + cofactor analog – ''Thermus aquaticus''<br />
**[[1aqi]] – Ta-adenine DNMT Taqi + SAH<br />
**[[1aqi]] – Ta-adenine DNMT Taqi + SAH<br />
Retrieved from "https://proteopedia.org/DNA_methyltransferase_3D_structures"