Structure superposition tools: Difference between revisions
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*The ''super'' command does structural alignment. | *The ''super'' command does structural alignment. | ||
*Color by RMSD: YES [http://www.pymolwiki.org/index.php/ColorByRMSD example]. | *Color by RMSD: YES [http://www.pymolwiki.org/index.php/ColorByRMSD example]. | ||
===UCSF Chimera=== | |||
*Download site: [http://www.pymol.org/ PyMOL.Org] | |||
*The ''matchmaker'' command does structural alignment, see [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/superposition.html here]. Or use "match" to specify exact atom pairs, see [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/superposition.html here] | |||
*Color by RMSD: YES [http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-June/012379.html steps outlined under '(4)'] or [http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-April/007393.html Under '(A)' here] | |||
===TopMatch=== | ===TopMatch=== | ||
