User:Karsten Theis/Animation course: Difference between revisions
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Open <jmol><jmolLink><script>script "http://proteopedia.org/scripts/52/520489/Ligand_pocket/2.spt"; x1 = script("show moveto")[11][0]; rotate y 90; x2 = script("show moveto")[11][0]; rotate x -90;x3 = script("show moveto")[11][0]; rotate y -90;x4 = script("show moveto")[11][0]; speed = "moveto 2.0"; script inline @{speed + x1}</script><text>mu opioid receptor</text></jmolLink></jmol> and use your skills learned from the [[viewing guide]] to explore the scene. | Open <jmol><jmolLink><script>script "http://proteopedia.org/scripts/52/520489/Ligand_pocket/2.spt"; x1 = script("show moveto")[11][0]; rotate y 90; x2 = script("show moveto")[11][0]; rotate x -90;x3 = script("show moveto")[11][0]; rotate y -90;x4 = script("show moveto")[11][0]; speed = "moveto 2.0"; script inline @{speed + x1}</script><text>mu opioid receptor</text></jmolLink></jmol> and use your skills learned from the [[viewing guide]] to explore the scene. | ||
1. Choose a background: <jmol> | 1. Choose a background: | ||
<jmol> | |||
<jmolRadioGroup> | <jmolRadioGroup> | ||
<item> | <item> | ||
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2. How, if it all, do you want to show the protein? <jmol> | 2. How, if it all, do you want to show the protein? | ||
<jmol> | |||
<jmolRadioGroup> | <jmolRadioGroup> | ||
<item> | <item> | ||
<script>select protein; color group;</script> | <script>select protein; cartoon only; color group;</script> | ||
<text>rainbow</text> | <text>rainbow</text> | ||
</item> | </item> | ||
<item> | <item> | ||
<script>select protein; color structure;</script> | <script>select protein; cartoon only; color structure;</script> | ||
<text>by structure</text> | <text>by structure</text> | ||
</item> | </item> | ||
<item> | <item> | ||
<script>select protein; color magenta;</script> | <script>select protein; cartoon only; color magenta;</script> | ||
<text>magenta</text> | <text>magenta</text> | ||
</item> | </item> | ||
<item> | <item> | ||
<script>select protein; color magenta transparent 0. | <script>select protein; cartoon only; color magenta transparent 0.9;</script> | ||
<text>transparent</text> | <text>transparent</text> | ||
</item> | </item> | ||
<item> | <item> | ||
<script>select protein; color chain;</script> | <script>select protein; cartoon only; cartoon off;</script> | ||
<text>invisible</text> | |||
</item> | |||
<item> | |||
<script>select protein; cartoon only; color chain;</script> | |||
<text>boring</text> | <text>boring</text> | ||
<checked>true</checked> | <checked>true</checked> | ||
| Line 57: | Line 65: | ||
</jmol> | </jmol> | ||
3. How do you want the opioid to look like? <jmol> | 3. How do you want the opioid to look like? | ||
<jmol> | |||
<jmolRadioGroup> | <jmolRadioGroup> | ||
<item> | <item> | ||
| Line 75: | Line 85: | ||
</jmol> | </jmol> | ||
4. Other choices: | |||
<jmol> | |||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>slab on; depth 40; var a = [80,70,65,63,62]; for(var i IN a) {slab @i; delay 0.4;};</scriptWhenChecked> | <scriptWhenChecked>slab on; depth 40; var a = [80,70,65,63,62]; for(var i IN a) {slab @i; delay 0.4;};</scriptWhenChecked> | ||
