111d: Difference between revisions

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[[Image:111d.jpg|left|200px]]
{{Seed}}
[[Image:111d.png|left|200px]]


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{{STRUCTURE_111d|  PDB=111d  |  SCENE=  }}  
{{STRUCTURE_111d|  PDB=111d  |  SCENE=  }}  


'''CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS'''
===CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS===




==Overview==
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The synthetic dodecanucleotide d(CGCAAATTGGCG) has been analysed by single-crystal X-ray diffraction techniques and the structure refined to R = 0.16 and 2.25 A resolution, with the location of 94 solvent molecules. The sequence crystallizes as a full turn of a B-DNA helix with ten Watson-Crick base-pairs and two adenine-guanine mispairs. The analysis clearly shows that the mismatches are of the form A(anti).G(syn). Thermal denaturation studies indicate that the stability of the duplex is strongly pH dependent, with a maximum at pH 5.0, suggesting that the base-pair is stabilized by protonation. Three different arrangements have been observed for base-pairs between guanine and adenine and it is likely that A.G mismatch conformation is strongly influenced by dipole-dipole interactions with adjacent base-pairs.
The line below this paragraph, {{ABSTRACT_PUBMED_2754734}}, adds the Publication Abstract to the page
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{{ABSTRACT_PUBMED_2754734}}


==About this Structure==
==About this Structure==
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[[Category: Double helix]]
[[Category: Double helix]]
[[Category: Mismatched]]
[[Category: Mismatched]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 09:25:59 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 15:22:23 2008''

Revision as of 12:22, 30 June 2008

File:111d.png

Template:STRUCTURE 111d

CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS

Template:ABSTRACT PUBMED 2754734

About this Structure

Full crystallographic information is available from OCA.

Reference

Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs., Brown T, Leonard GA, Booth ED, Chambers J, J Mol Biol. 1989 May 20;207(2):455-7. PMID:2754734

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