1a13: Difference between revisions

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[[Image:1a13.gif|left|200px]]
{{Seed}}
[[Image:1a13.png|left|200px]]


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{{STRUCTURE_1a13|  PDB=1a13  |  SCENE=  }}  
{{STRUCTURE_1a13|  PDB=1a13  |  SCENE=  }}  


'''G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES'''
===G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES===




==Overview==
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Mastoparans, a family of tetradecapeptides from wasp venom, have been used as convenient low molecular weight models of receptors coupled to GTP-binding regulatory proteins (G proteins) for the understanding of the interaction between G proteins and receptors. Sukumar and Higashijima have analyzed the conformation of mastoparan-X (MP-X) bound to the G protein alpha-subunit using proton two-dimensional transferred nuclear Overhauser effect (TRNOE) spectroscopy [Sukumar, M., and Higashijima, T. (1992) J. Biol. Chem., 267, 21421-21424]. The resultant structure, however, was not well-defined due to severe overlap of peptide proton resonances. To determine the G protein-bound conformation of MP-X in detail, we have analyzed this interaction by heteronuclear multidimensional TRNOE experiments of MP-X uniformly enriched with 15N and/or 13C. By solving the overlap problem, we were able to determine the precise conformation of MP-X bound to Gi1alpha: the peptide adopts an amphiphilic alpha-helix from Trp3 to C-terminal Leu14, and the atomic root-mean-square deviation (rmsd) values in this portion about the averaged coordinates were 0.27 +/- 0.07 A for the backbone atoms (N, Calpha, C') and 0.84 +/- 0.16 A for all heavy atoms. These values are much smaller than the corresponding rmsd values of the structures obtained from the proton 2D TRNOE spectrum alone: 1.70 +/- 0.41 A for the backbone atoms (N, Calpha, C') and 2.84 +/- 0.51 A for all heavy atoms. Our results indicate that the heteronuclear multidimensional TRNOE experiments of peptides uniformly enriched with stable isotopes are a very powerful tool for analyzing the conformation of short peptides bound to large proteins. We will also discuss the structure-activity relationships of mastoparans in activating G proteins on the basis of the precise structure of MP-X bound to Gi1alpha.
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{{ABSTRACT_PUBMED_9537994}}


==About this Structure==
==About this Structure==
1A13 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vespa_simillima_xanthoptera Vespa simillima xanthoptera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A13 OCA].  
1A13 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vespa_simillima_xanthoptera Vespa simillima xanthoptera]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A13 OCA].  


==Reference==
==Reference==
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[[Category: Wakamatsu, K.]]
[[Category: Wakamatsu, K.]]
[[Category: Mast cell degranulation]]
[[Category: Mast cell degranulation]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 09:39:01 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 15:45:43 2008''

Revision as of 12:45, 30 June 2008

File:1a13.png

Template:STRUCTURE 1a13

G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES

Template:ABSTRACT PUBMED 9537994

About this Structure

1A13 is a Single protein structure of sequence from Vespa simillima xanthoptera. Full experimental information is available from OCA.

Reference

G protein-bound conformation of mastoparan-X: heteronuclear multidimensional transferred nuclear overhauser effect analysis of peptide uniformly enriched with 13C and 15N., Kusunoki H, Wakamatsu K, Sato K, Miyazawa T, Kohno T, Biochemistry. 1998 Apr 7;37(14):4782-90. PMID:9537994

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