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Structure

spinqualitylabelsall models Tetrahydroprotoberbine Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Tetrahydroprotoberbine N-methyltransferase is a protein thats dimer interface includes six salt 6 salt bridges and 8 hydrogens bonds. It is expressed in E. coli and crystallized at a pH of 7.0. The crystals were grown in the presence of SAH,SAM, and SAH+SMS. The most significant substrate is SAM which is shown to the right. Function The protein being studied, Tetrahydroprotoberbine N-methyltransferase, is found in yellow horned poppy (Glaucium Flavum). The function of the protein is substate recognition as well as catalysis for the ration engineering of enyzmes for chemoenzymatic synthesis and metabolic engineering. The relative activity of about 8 substrates were tested wiht Protoberberine having the highest percentage. GfTNMT's activity depends on temperature and pH. When the enzyme's activity was at a pH of 8, dropped 10% in activity. 10% activity was also dropped when the temperature was at 30 degrees Celsius. When at 4 degrees Celsius, the activity dropped even more down to 40%. Mutants In TMNT, three amino acid residues in the alpha14-helix form one side of the binding pocket defining the BP region. The binding pocket consists of His-328(green), Ile-329(purple), and Phe-332(orange). The H328 mutation decreases in activity with stylopine and scoulerine producing a 5- and 2-fold while the activity with THP increases 2-fold. Relevance Studying Tetrahydroprotoberbine will provide commercial application where one will gain a lot of knowledge from both the research paper and online sources. Studying this protein will allow readers to engage in the material and apply their own knowledge to better understand the study. This research will provide descriptive roles that TNMT plays such as pathway leading to the formation of different substrates including Protoberberine. Structural Highlights This protein has a catalytic triad which consists of amino acids His-208, Glu-204, and Glu-207. The authors explained within the paper that other amino acids may play a role in the triad as well. They were unsure but those three were the most accurate. These amino acids play an important role in catalysis for the protein. . The basic spacefill view of the entire protein alllows readers to visualize the different elements show in different colors. The elements shown are carbons(grey), nitrogen(blue), and oxygen(red). This protein has a ligand which is SAM. There are hydrophilic side chains of SAM that form a small catalytic pocket and surrounds the amino group and methyl donor of SAM. This catalytic pocket forms a L shape. In green Glu-204, yellow is Glu-207, red is His-208, and Tyr-81 is blue. There are hydrophobic side chains that consist of Ile-234(purple), Phe-243(green), Phe-257(yellow), Val-262(blue), Met-290(red),and Phe-340(baby blue) which form a isoquinoline pocket. The active site of the protein consists of amino acids Valine-188(yellow), Aspartic Acid-187(blue), and Alanine-186(green), with purple being the rest of the ligand, SAM. The active site is the region where substrate molecules bind and undergo a chemical reaction. The secondary structure of this protein contains a pattern of hydrogen bonds between atoms in the peptide bond. This cartoon view allows readers to visualize the alpha(pink) and beta sheets(yellow). The protein consists of two regions which are polar and non-polar regions. The non-polar region is in grey while the polar region is in purple. The cationic region of the protein has a side chain of Lysine, Arginine, Aspartic Acid, and Glutamic Acid. The cationic region is in the light blue. Energy Transformation The exact values for kinetic parameters are challenging to determine because of the presence of high levels of apparent substrate and product inhibition.