Practical Guide to Homology Modeling: Difference between revisions

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====Protein Model Portal====
====Protein Model Portal====


Under the subheading ''3D Structure Databases'', click on the linked UniProt ID at ProteinModelPortal. Here you will find bar graphics showing the coverage by pre-calculated homology models. Touching the blue bars reports the sequence range for each model.
The ProteinModelPortal has been shut down and remains to serve as a relay to established resources pre-calculating protein structure models.  
 
Below is a table listing sequence ranges and percentages of sequence identity. Clicking on '''<nowiki>[Show]</nowiki>''' gives you a report with a link to download the homology model.
* SWISSMODEL: use the '''<nowiki>[ download ]</nowiki>''' link.
* <font color='red'>Important for MODBASE: Click on MODBASE</font> (not <nowiki>[ download ]</nowiki> which will give you a file not readable by FirstGlance). At the ModBase page, open the menu under <font color='green'>Perform action on this model</font> and select ''Coordinate File''. This will download a PDB file readable by FirstGlance.
 
Notice the section at the bottom of the page ''Remodel this protein''. This is a good option if you don't find a satisfactory model.


====SMR: Swiss Model Repository====
====SMR: Swiss Model Repository====