4y02: Difference between revisions
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<StructureSection load='4y02' size='340' side='right'caption='[[4y02]], [[Resolution|resolution]] 1.96Å' scene=''> | <StructureSection load='4y02' size='340' side='right'caption='[[4y02]], [[Resolution|resolution]] 1.96Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4y02]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[4y02]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y02 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y02 OCA], [https://pdbe.org/4y02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y02 RCSB], [https://www.ebi.ac.uk/pdbsum/4y02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y02 ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref> | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Fujimoto | [[Category: Porphyromonas gingivalis]] | ||
[[Category: Iizuka | [[Category: Fujimoto M]] | ||
[[Category: Nonaka | [[Category: Iizuka I]] | ||
[[Category: Ogasawara | [[Category: Nonaka T]] | ||
[[Category: Roppongi | [[Category: Ogasawara W]] | ||
[[Category: Sakamoto | [[Category: Roppongi S]] | ||
[[Category: Suzuki | [[Category: Sakamoto Y]] | ||
[[Category: Tanaka | [[Category: Suzuki Y]] | ||
[[Category: Tateoka | [[Category: Tanaka N]] | ||
[[Category: Tateoka C]] | |||
