Sandbox Reserved 1627: Difference between revisions

From Proteopedia
Jump to navigationJump to search
No edit summary
No edit summary
Line 11: Line 11:
====Alpha Subunits====
====Alpha Subunits====
[[Image:Harrison Image2.png|thumb|right|260px|Figure 1: Insulin receptor apo receptor. Site L1' is colored a dark green, CR' is orange, L2' is bright blue, L2 is yellow, CR is red, L1 is dark blue, FnIII-1 is brown, and FnIII-2 is light pink. Insulin is shown bound and is colored dark pink. [http://www.rcsb.org/structure/6CE7 PDB 6CE7]]]
[[Image:Harrison Image2.png|thumb|right|260px|Figure 1: Insulin receptor apo receptor. Site L1' is colored a dark green, CR' is orange, L2' is bright blue, L2 is yellow, CR is red, L1 is dark blue, FnIII-1 is brown, and FnIII-2 is light pink. Insulin is shown bound and is colored dark pink. [http://www.rcsb.org/structure/6CE7 PDB 6CE7]]]
The alpha subunits make up the extracellular domain ([http://en.wikipedia.org/wiki/Ectodomain ectodomain]) of the insulin receptor and are the sites of insulin binding. The alpha subunit is comprised of two Leucine rich domains (L1 & L2), a Cysteine rich domain (CR), and a <scene name='83/832953/Alpha_c_helix/6'>C-Terminal alpha helix</scene>(Figure 1). <ref name="Scapin"> PMID 29512653 </ref> The CT-alpha helix is unique in its position that allows it to reach across the receptor and interact with the insulin at the binding site on the opposing side of the receptor. The alpha subunits are held together by a [http://en.wikipedia.org/wiki/Disulfide disulfide bond] between <scene name='83/832953/Cysteine_bond/1'>cysteine residues</scene> at the CYS524 position on each alpha subunit. The disulfide bonds are important to the overall stabilization of the molecule has it binds to insulin. Two types of insulin binding sites are present in the alpha subunits, <scene name='83/832953/Sites_1_and_1_prime_location/15'>sites 1 and 1'</scene> and <scene name='83/832953/Sites_2_and_2_prime_location/12'>sites 2 and 2'</scene> (Figure 2). The sites are in pairs because of the heterodimeric nature of the receptor. Due to structural differences, as well as greater surface area and accessibility, binding sites 1 and 1' have much higher affinity than that of sites 2 and 2'. Insulin can also bind at sites 2 and 2', but the location on the back of the beta sheet of the FnIII-1 domain and lack of surface area decreases the likelihood of their binding site becoming occupied as quickly. <ref name="Uchikawa"> DOI 10.7554/eLife.48630 </ref> Cryo-EM has imaged insulin bound structures that displayed a T-shape conformation in the alpha subunits, which make up the receptors extracellular domain region.<ref name="Uchikawa" />  
The alpha subunits make up the extracellular domain ([http://en.wikipedia.org/wiki/Ectodomain ectodomain]) of the insulin receptor and are the sites of insulin binding. The alpha subunit is comprised of two Leucine rich domains (L1 & L2), a Cysteine rich domain (CR), and a <scene name='83/832953/Alpha_c_helix/6'>C-Terminal alpha helix</scene>(Figure 1). <ref name="Scapin"> PMID 29512653 </ref> The CT-alpha helix is unique in its position that allows it to reach across the receptor and interact with the insulin at the binding site on the opposing side of the receptor. The alpha subunits are held together by a [http://en.wikipedia.org/wiki/Disulfide disulfide bond] between <scene name='83/832953/Cysteine_bond/2'>cysteine residues</scene> at the CYS524 position on each alpha subunit. The disulfide bonds are important to the overall stabilization of the molecule has it binds to insulin. Two types of insulin binding sites are present in the alpha subunits, <scene name='83/832953/Sites_1_and_1_prime_location/15'>sites 1 and 1'</scene> and <scene name='83/832953/Sites_2_and_2_prime_location/12'>sites 2 and 2'</scene> (Figure 2). The sites are in pairs because of the heterodimeric nature of the receptor. Due to structural differences, as well as greater surface area and accessibility, binding sites 1 and 1' have much higher affinity than that of sites 2 and 2'. Insulin can also bind at sites 2 and 2', but the location on the back of the beta sheet of the FnIII-1 domain and lack of surface area decreases the likelihood of their binding site becoming occupied as quickly. <ref name="Uchikawa"> DOI 10.7554/eLife.48630 </ref> Cryo-EM has imaged insulin bound structures that displayed a T-shape conformation in the alpha subunits, which make up the receptors extracellular domain region.<ref name="Uchikawa" />  
[[Image:4 sites highlighted - Harrison.png|thumb|right|260px|Figure 2: The four binding sites of insulin. Sites 1 and 1' are colored green, sites 2 and 2' are colored red.  [http://www.rcsb.org/structure/6SOF PDB 6SOF]]]
[[Image:4 sites highlighted - Harrison.png|thumb|right|260px|Figure 2: The four binding sites of insulin. Sites 1 and 1' are colored green, sites 2 and 2' are colored red.  [http://www.rcsb.org/structure/6SOF PDB 6SOF]]]


Line 24: Line 24:


===Binding interactions===
===Binding interactions===
For insulin binding to induce the activation of the receptor and change its conformation to the active T state, binding at sites 1 and 1', as well as one insulin to either binding site 2 or 2', is required <ref name= "Uchikawa" />. Although interactions at all four binding sites are highly hydrophobic, the ligand binding interactions at sites 1 and 1' are different than at sites 2 and 2'. Sites 1 and 1' are signified by interactions between <scene name='83/832953/Sites_1_and_1_prime_location/14'>PRO495, PHE497, ARG498</scene> residues from the FnIII-1 domain and particular residues on the insulin ligand, such as HIS5. They also have significant disulfide linkages that help maintain a compact binging site. At sites 2 and 2' the FnIII-1 region has <scene name='83/832953/Sites_2_and_2_prime_location/10'>both basic residues-ARG479, LYS484, ARG488, ARG554- and hydrophobic residues- LEU486, LEU552, and PRO537-</scene> interacting with numerous residues on the surface of the insulin ligand.  
For insulin binding to induce the activation of the receptor, binding at sites 1 and 1', as well as one insulin to either binding site 2 or 2', is required <ref name= "Uchikawa" />. Although interactions at all four binding sites are highly hydrophobic, the ligand binding interactions at sites 1 and 1' are different than at sites 2 and 2'. Sites 1 and 1' are signified by interactions between <scene name='83/832953/Sites_1_and_1_prime_location/14'>PRO495, PHE497, ARG498</scene> residues from the FnIII-1 domain and particular residues on the insulin ligand (HIS5, VAL3, VAL12, CYS7, ILE2, LEU15,TYR19, TYR26, PHE25). The alpha subunits also have significant <scene name='83/832953/Cysteine_bond/2'>disulfide linkages</scene> that help maintain a compact binging site. At sites 2 and 2' the FnIII-1 region has <scene name='83/832953/Sites_2_and_2_prime_location/10'>both basic residues-ARG479, LYS484, ARG488, ARG554- and hydrophobic residues- LEU486, LEU552, and PRO537-</scene> interacting with numerous residues on the surface of the insulin ligand.  


At binding sites 1 and 1', a <scene name='83/832953/Tripartite_interaction/5'>tripartite interaction</scene> occurs between three critical parts of the alpha subunits of the insulin receptor. <ref name="Uchikawa" /> The entire interface of the tripartite interaction involves many residues that are involved with intra-protomer, ionic, and hydrogen bonding at the binding site. The α-CT chain and the FnIII-1 domain region become in close proximity during the conformational change of the insulin receptor. This interaction most specifically involves the following residues: <scene name='83/832953/Alpha_ct_and_fniii-1/7'>ASP496, ARG498, and ASP499 on the FnIII-1 domain</scene> and the <scene name='83/832953/Alpha_ct_and_fniii-1/9'>LYS703, GLU706, and ASP707 on the α-CT domain</scene>. This duo then interacts with the leucine rich region, L1, creating an ideal binding site for the insulin ligand. The FnIII-1 and α-CT are interacting from the two different alpha subunits, which displays a "cross linking" scenario where the domains of the heterodimer can intertwine with each other. The tripartite interaction between the α-CT chain, FnIII-1 domain, and the L1 region is important because it allows for a strong interaction between two subunits of the insulin receptor that maintains and stabilizes the T-shape activation state for the rest of the downstream signaling to occur. <ref name="Uchikawa" />
At binding sites 1 and 1', a <scene name='83/832953/Tripartite_interaction/5'>tripartite interaction</scene> occurs between three critical parts of the alpha subunits of the insulin receptor. <ref name="Uchikawa" /> The entire interface of the tripartite interaction involves many residues that are involved with intra-protomer, ionic, and hydrogen bonding at the binding site. The α-CT chain and the FnIII-1 domain region become in close proximity during the conformational change of the insulin receptor. This interaction most specifically involves the following residues: <scene name='83/832953/Alpha_ct_and_fniii-1/7'>ASP496, ARG498, and ASP499 on the FnIII-1 domain</scene> and the <scene name='83/832953/Alpha_ct_and_fniii-1/9'>LYS703, GLU706, and ASP707 on the α-CT domain</scene>. This duo then interacts with the leucine rich region, L1, creating an ideal binding site for the insulin ligand. The FnIII-1 and α-CT are interacting from the two different alpha subunits, which displays a "cross linking" scenario where the domains of the heterodimer can intertwine with each other. The tripartite interaction between the α-CT chain, FnIII-1 domain, and the L1 region is important because it allows for a strong interaction between two subunits of the insulin receptor that maintains and stabilizes the T-shape activation state for the rest of the downstream signaling to occur. <ref name="Uchikawa" />