5udg: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
Line 3: Line 3:
<StructureSection load='5udg' size='340' side='right'caption='[[5udg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='5udg' size='340' side='right'caption='[[5udg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5udg]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UDG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5UDG FirstGlance]. <br>
<table><tr><td colspan='2'>[[5udg]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UDG FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4f8b|4f8b]], [[4fgc|4fgc]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">queF, A9D36_18900, AX282_02560, B4122_4589, B4417_3799, BN2127_JRS11_03356, BN2127_JRS2_02117, BN2127_JRS6_01198, BN2127_JRS9_01727, SC09_Contig19orf00807 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5udg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5udg OCA], [https://pdbe.org/5udg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5udg RCSB], [https://www.ebi.ac.uk/pdbsum/5udg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5udg ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxidoreductase Oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.1.13 1.7.1.13] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5udg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5udg OCA], [http://pdbe.org/5udg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5udg RCSB], [http://www.ebi.ac.uk/pdbsum/5udg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5udg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/A0A063X9I2_BACIU A0A063X9I2_BACIU]] Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).[HAMAP-Rule:MF_00818][SAAS:SAAS00534865]
[https://www.uniprot.org/uniprot/QUEF_BACSU QUEF_BACSU] Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1), a late step in the queuosine pathway.<ref>PMID:15767583</ref> <ref>PMID:17929836</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oxidoreductase]]
[[Category: Iwata-Reuyl D]]
[[Category: Iwata-Reuyl, D]]
[[Category: Kiani MK]]
[[Category: Kiani, M K]]
[[Category: Mohammad A]]
[[Category: Mohammad, A]]
[[Category: Stec B]]
[[Category: Stec, B]]
[[Category: Swairjo M]]
[[Category: Swairjo, M]]
[[Category: Disulfide inactivation]]
[[Category: Nadph-dependent reduction of the nitrile group]]
[[Category: Trna modification pathway]]
[[Category: Tunnel fold]]