User:Karsten Theis/Favorite 3D scenes: Difference between revisions
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New page: ==Consideration for a BioMolViz category tag== This is a collection of scenes I like. They show what is possible in Jmol, and they illustrate the power of biomolecular visualization partic... |
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<scene name='82/824000/Contacts/4'>3D scene</scene> and [http://proteopedia.org/w/Cellulose#multiple%20layers%20stack page context] | <scene name='82/824000/Contacts/4'>3D scene</scene> and [http://proteopedia.org/w/Cellulose#multiple%20layers%20stack page context] | ||
This shows a model of cellulose (based on structural data, but not a crystal structure). The scene shows interactions of one glucose unit (hydrogen bonding within the layer, hydrophobic interactions between layers) explaining why cellulose is water insoluble and hard to hydrolyze. The scene makes use of slabbing so we can see the context while not obscuring the focal point. It uses the Jmol "contact" command to show both hydrogen bonds and hydrophobic contacts. | This shows a model of cellulose (based on structural data, but not a crystal structure). The scene shows interactions of one glucose unit (hydrogen bonding within the layer, hydrophobic interactions between layers) explaining why cellulose is water insoluble and hard to hydrolyze. The scene makes use of slabbing so we can see the context while not obscuring the focal point. It uses the Jmol "contact" command to show both hydrogen bonds and hydrophobic contacts. You can turn off the <jmol> | ||
<jmolCheckbox> | |||
<scriptWhenChecked>contact on</scriptWhenChecked> | |||
<scriptWhenUnchecked>contact off</scriptWhenUnchecked> | |||
<checked>true</checked> | |||
<text>contacts</text> | |||
</jmolCheckbox> | |||
</jmol> to see the hydrogen bond lengths. | |||
http://proteopedia.org/wiki/index.php/Cellulose#multiple%20layers%20stack | http://proteopedia.org/wiki/index.php/Cellulose#multiple%20layers%20stack | ||
