Sandbox GGC1: Difference between revisions

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Histone H3.3 is a variant histone of H3 which has the gene name H3.3A and this particular protein is found in Humans. The location of this can be found in the nucleus and in the chromosome.<ref>https://www.uniprot.org/uniprot/P84243</ref>
Histone H3.3 is a variant histone of H3 which has the gene name H3.3A and this particular protein is found in Humans. The location of this can be found in the nucleus and in the chromosome.<ref>https://www.uniprot.org/uniprot/P84243</ref>
== Function ==  
== Function ==  
[https://www.uniprot.org/uniprot/P84243 Histone H3] replaces H3 in active genes and it takes over the original H3 in non dividing cells. The nucleosomes can wrap around and compact DNA into chromatin and then as a result, it limits DNA access to cellular machineries that would need DNA as a template. Histones are needed in regulation of transcription, DNA repair, DNA replication and also chromosomal stability. Access to DNA is regulated by histone code, and nucleosome remodeling. It also serves as a replacement histone that's imbedded chromatin regions by the HIRA chaperone, after the depletion of the H3.1 during transcription and DNA repair.<ref>https://www.uniprot.org/uniprot/P84243</ref>
[https://www.uniprot.org/uniprot/P84243 Histone H3] replaces H3 in active genes and it takes over the original H3 in non dividing cells. The nucleosomes can then wrap around and compact DNA into chromatin and then as a result, it limits DNA access to cellular machineries that would need DNA to serve as a template. It also serves as a replacement histone that's inside chromatin regions by the HIRA chaperone, after the consumption of H3.1 during transcription and DNA repair. They are also needed in regulation of transcription, DNA replication and repair, etc. Access to DNA is regulated by histone code, and nucleosome remodeling.<ref>https://www.uniprot.org/uniprot/P84243</ref>
== Disease ==
== Disease ==
There have been studies that have identified  mutations encoding a K27M substitution and there have also been mutations that encoded
There have been studies that have identified  mutations encoding a K27M substitution and there have also been mutations that encoded
GLY 34 to ARG or VAL called the G34R/V substitution. K27M tumors are present in the spinal cord, thalamus, pons, brainstem and G34R/V tumors are shown in the cerebral hemispheres. There are mutations in H3.3 that are found in different types of bone tumors like [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446520/ chrondroblastoma] for example and giant cell tumors of the bone. [https://cancerdiscovery.aacrjournals.org/content/3/12/1329.1 Chondroblastoma]arises in children and in young adults in the cartilage of the growth plates of the long bones and is most typically benign.
GLY 34 to ARG or VAL called the G34R/V substitution. K27M tumors are spotted in the spinal cord, pons, thalamus for example and G34R/V tumors are shown in the cerebral hemispheres. There are mutations in H3.3 that are found in different types of bone tumors like [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446520/ chrondroblastoma] for example and even giant cell tumors of the bone. [https://cancerdiscovery.aacrjournals.org/content/3/12/1329.1 Chondroblastoma]can be seen in children and in young adults (if they are diagnosed with it) in the cartilage of the growth plates of the long bones but most are usually benign.


Glioma is another disease caused by the H3F3A mutation, however they are not harmful or either malignant central nervous system of abnormal growth of tissue from glial cells.
Glioma is another disease caused by the H3F3A mutation, however they are not harmful or either malignant central nervous system of abnormal growth of tissue from glial cells.
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== Relevance ==
== Relevance ==


Histone octamer containing two of H2A, H2B, H3 and H4 and the octamer wraps 147bp of DNA. H3.3 interacts with HIRA which is a chaperone and ZMYND11 when trimethylated at <scene name='75/752263/3wtp/2'>Lysine-36</scene> (color coded dark blue)<ref>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5446305/</ref>. HIRA can deposit histones of H3.3 in replicating and non replicating cells. Also in the HIRA complex, Anti slicing factors ASF1a and ASF1b are purified by H3.3. However, when there's a disappearance of HIRA which is responsible for H3.3 deposition, it can cause defects in the early stages of embryogenesis. ZMYND11 also known as BS69 can find H3.3 LYS 36 trimethylation (H3.3K36me3) by the binding domain of chromatin <ref>https://www.pnas.org/content/112/22/6814</ref>.
Histone octamer contains two of H2A, H2B, H3 and H4 and the octamer wraps approx 147bp of DNA. H3.3 can interact with HIRA and ZMYND11 when trimethylated at <scene name='75/752263/3wtp/2'>Lysine-36</scene> (color coded dark blue)<ref>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5446305/</ref>. HIRA can deposit histones of H3.3 in replicating and non replicating cells. Also in the HIRA complex, Anti slicing factors like ASF1a and ASF1b are purified by H3.3. However, when there's a disappearance of the HIRA complex, it can cause defects in the early stages of embryogenesis. ZMYND11 also known as BS69 can find H3.3 LYS 36 trimethylation (H3.3K36me3) by the binding domain of chromatin <ref>https://www.pnas.org/content/112/22/6814</ref>.
== Structural highlights ==
== Structural highlights ==
[https://www.nature.com/articles/srep07115 CENP-A]is a centromere specific  that's also variant of Histone H3 and it's controlled in normal cells and its chromosome localization is heavily restricted in the centromere regions. It can be over expressed in cancer cells and also be mislocalized ectopically in the form of heterotypic nucleosomes containing H3.3 <ref>https://www.nature.com/articles/srep07115</ref>. In vitro, the human CENP-A nucleosomes can have two copies each of CENP-A, H2A, H2B and H4 histones <ref>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585026/</ref>.<scene name='75/752263/Arg_49/1'>ARG 49</scene> is located on H3.3 and is on the E chain (color coded light pink). The significance to this is that ARG 49 of Asf1 is maintained as threonine or glutamic acid. Histone H2B located on chains D and H (color coded dark blue), histone H2A type 1-B/E which is located chains C and G (also color coded dark blue),Histone H3-like centromeric protein A is located on chain A (color coded in the lightest blue),and Histone H4 is located on chains B and F (color coded medium blue) <ref>https://www.rcsb.org/structure/3WTP</ref>.
[https://www.nature.com/articles/srep07115 CENP-A] has a specific centromere and it's controlled in normal cells and its chromosome localization is heavily restricted in the centromere regions. It can be over expressed in cancer cells and can also be abnormally located in the form of heterotypic nucleosomes containing H3.3 <ref>https://www.nature.com/articles/srep07115</ref>. In vitro, the human CENP-A nucleosomes can have two copies each of CENP-A, H2A, H2B and H4 histones <ref>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585026/</ref>.<scene name='75/752263/Arg_49/1'>ARG 49</scene> is located on H3.3 and is on the E chain (color coded light pink). The significance to this is that ARG 49 of Asf1 is maintained as either threonine or glutamic acid. Histone H2B located on chains D and H (color coded dark blue), histone H2A type 1-B/E which is located chains C and G (also color coded dark blue),Histone H3-like centromeric protein A is located on chain A (color coded in the lightest blue),and Histone H4 is located on chains B and F (color coded medium blue) <ref>https://www.rcsb.org/structure/3WTP</ref>.


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