6xti: Difference between revisions

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==NMR solution structure of class IV lasso peptide felipeptin A2 from Amycolatopsis sp. YIM10==

== Structural highlights ==

<table><tr><td colspan='2'>Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XTI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XTI FirstGlance]. <br>

<table><tr><td colspan='2'>[[6xti]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amycolatopsis_sp. Amycolatopsis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XTI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XTI FirstGlance]. <br>

</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xti OCA], [http://pdbe.org/6xti PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xti RCSB], [http://www.ebi.ac.uk/pdbsum/6xti PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xti ProSAT]</span></td></tr>

</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6xth|6xth]]</div></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xti OCA], [http://pdbe.org/6xti PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xti RCSB], [http://www.ebi.ac.uk/pdbsum/6xti PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xti ProSAT]</span></td></tr>

</table>

== Publication Abstract from PubMed ==

Heterologous expression of a biosynthesis gene cluster from Amycolatopsis sp. resulted in the discovery of two unique class IV lasso peptides, felipeptins A1 and A2. A mixture of felipeptins stimulated proliferation of cancer cells, while having no such effect on the normal cells. Detailed investigation revealed, that pre-treatment of cancer cells with a mixture of felipeptins resulted in downregulation of the tumor suppressor Rb, making the cancer cells to proliferate faster. Pre-treatment with felipeptins made cancer cells considerably more sensitive to the anticancer agent doxorubicin and re-sensitized doxorubicin-resistant cells to this drug. Structural characterization and binding experiments showed an interaction between felipeptins resulting in complex formation, which explains their synergistic effect. This discovery may open an alternative avenue in cancer treatment, helping to eliminate quiescent cells that often lead to cancer relapse.

Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin.,Guerrero-Garzon JF, Madland E, Zehl M, Singh M, Rezaei S, Aachmann FL, Courtade G, Urban E, Ruckert C, Busche T, Kalinowski J, Cao YR, Jiang Y, Jiang CL, Selivanova G, Zotchev SB iScience. 2020 Nov 10;23(12):101785. doi: 10.1016/j.isci.2020.101785. eCollection, 2020 Dec 18. PMID:33294793<ref>PMID:33294793</ref>

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>

</div>

== References ==

__TOC__

</StructureSection>

[[Category: Amycolatopsis sp]]

[[Category: Large Structures]]

[[Category: Aachmann FL]]

[[Category: Aachmann, F L]]

[[Category: Courtade G]]

[[Category: Courtade, G]]

[[Category: Guerrero-Garzon JF]]

[[Category: Guerrero-Garzon, J F]]

[[Category: Madland E]]

[[Category: Madland, E]]

[[Category: Zotchev SB]]

[[Category: Zotchev, S B]]

[[Category: Antibacterial]]

[[Category: Class iv]]

[[Category: Lasso peptide]]

[[Category: Unknown function]]

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 ==NMR solution structure of class IV lasso peptide felipeptin A2 from Amycolatopsis sp. YIM10==
-<StructureSection load='6xti' size='340' side='right'caption='[[6xti]]' scene=''>
+<StructureSection load='6xti' size='340' side='right'caption='[[6xti]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XTI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XTI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6xti]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amycolatopsis_sp. Amycolatopsis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XTI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XTI FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xti OCA], [http://pdbe.org/6xti PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xti RCSB], [http://www.ebi.ac.uk/pdbsum/6xti PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xti ProSAT]</span></td></tr>
+</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6xth|6xth]]</div></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xti OCA], [http://pdbe.org/6xti PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xti RCSB], [http://www.ebi.ac.uk/pdbsum/6xti PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xti ProSAT]</span></td></tr>
 </table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Heterologous expression of a biosynthesis gene cluster from Amycolatopsis sp. resulted in the discovery of two unique class IV lasso peptides, felipeptins A1 and A2. A mixture of felipeptins stimulated proliferation of cancer cells, while having no such effect on the normal cells. Detailed investigation revealed, that pre-treatment of cancer cells with a mixture of felipeptins resulted in downregulation of the tumor suppressor Rb, making the cancer cells to proliferate faster. Pre-treatment with felipeptins made cancer cells considerably more sensitive to the anticancer agent doxorubicin and re-sensitized doxorubicin-resistant cells to this drug. Structural characterization and binding experiments showed an interaction between felipeptins resulting in complex formation, which explains their synergistic effect. This discovery may open an alternative avenue in cancer treatment, helping to eliminate quiescent cells that often lead to cancer relapse.
+Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin.,Guerrero-Garzon JF, Madland E, Zehl M, Singh M, Rezaei S, Aachmann FL, Courtade G, Urban E, Ruckert C, Busche T, Kalinowski J, Cao YR, Jiang Y, Jiang CL, Selivanova G, Zotchev SB iScience. 2020 Nov 10;23(12):101785. doi: 10.1016/j.isci.2020.101785. eCollection, 2020 Dec 18. PMID:33294793<ref>PMID:33294793</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 6xti" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
 __TOC__
 </StructureSection>
+[[Category: Amycolatopsis sp]]
 [[Category: Large Structures]]
-[[Category: Aachmann FL]]
+[[Category: Aachmann, F L]]
-[[Category: Courtade G]]
+[[Category: Courtade, G]]
-[[Category: Guerrero-Garzon JF]]
+[[Category: Guerrero-Garzon, J F]]
-[[Category: Madland E]]
+[[Category: Madland, E]]
-[[Category: Zotchev SB]]
+[[Category: Zotchev, S B]]
+[[Category: Antibacterial]]
+[[Category: Class iv]]
+[[Category: Lasso peptide]]
+[[Category: Unknown function]]