Cavity programs: Difference between revisions
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PACUPP offers a number of simple commands specialized for visualizing cavities, mostly single letter commands. Some call up a dialog where the use enters information. Learning the PACUPP commands is much easier than learning Jmol commands. | PACUPP offers a number of simple commands specialized for visualizing cavities, mostly single letter commands. Some call up a dialog where the use enters information. Learning the PACUPP commands is much easier than learning Jmol commands. | ||
PACUPP is a Jmol script. It processes 2/3 of the entries in the [[Protein Data Bank]] in ≤15 sec. For large models such as ribosomes or proteasomes that may take many minutes, PACUPP offers an unattended batch mode. | PACUPP is a Jmol script. It processes 2/3 of the entries in the [[Protein Data Bank]] in ≤15 sec each. For large models such as ribosomes or proteasomes that may take many minutes, PACUPP offers an unattended batch mode. | ||
==References== | ==References== | ||
<references /> | <references /> | ||
