Cavity programs: Difference between revisions
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[[Jmol]] can identify and display pockets and cavities as isosurfaces. Examples are shown at [[Jmol/Cavities pockets and tunnels]], where you will also find explanations of the interior cavity and pocket commands. | [[Jmol]] can identify and display pockets and cavities as isosurfaces. Examples are shown at [[Jmol/Cavities pockets and tunnels]], where you will also find explanations of the interior cavity and pocket commands. | ||
Jmol has an extensive command language that provides great flexibility in visualizing cavities. | Jmol has an extensive command language that provides great flexibility in visualizing cavities. However, displaying more than one isosurface fragment at a time, and coloring the fragments differently (as in the left snapshot) is cumbersome. | ||
The Jmol Java standalone application is downloadable from [http://jmol.org jmol.org]. It is also available as JSmol, a Javascript implementation used in most pages in Proteopedia. | The Jmol Java standalone application is downloadable from [http://jmol.org jmol.org]. It is also available as JSmol, a Javascript implementation used in most pages in Proteopedia. | ||
Jmol is updated | Jmol is updated often, most recently November 19, 2020. | ||
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