The BioMolViz Project: Difference between revisions
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<text>with surface</text> | <text>with surface</text> | ||
</jmolLink> | </jmolLink> | ||
</jmol>bovine rhodopsin with bound retinal </scene> (PDB ID: 1gzm) is shown, with discrete hydrophobic ( | </jmol>bovine rhodopsin with bound retinal </scene> (PDB ID: 1gzm) is shown, with discrete hydrophobic (gray) and hydrophilic (pink) regions displayed that allow this membrane protein to interact with extracellular/intracellular environments. The viewer should recognize the hydrophobic sections are most likely found in the nonpolar milieu of the bilayer while the polar sections are likely the extracellular and intracellular domains. An example of an assessment for CA2.04 would require students to display the polarity of alpha helices in different environments, comment on the hydrophobic exterior of this helix, and connect this to a probable location as a membrane-bound protein. | ||
:''CA2.04 Students can make accurate predictions of the location/function of the protein that incorporates additional protein features, such as transmembrane helices, apparent docking surfaces, etc. (Expert)'' | :''CA2.04 Students can make accurate predictions of the location/function of the protein that incorporates additional protein features, such as transmembrane helices, apparent docking surfaces, etc. (Expert)'' | ||
