Cavity programs: Difference between revisions
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CASTp 3.0 published summer, 2018<ref>PMID: 29860391</ref>. Available as a web server, and a PyMOL plugin. Results can be downloaded for offline viewing with the PyMOL plugin. | CASTp 3.0 published summer, 2018<ref>PMID: 29860391</ref>. Available as a web server, and a PyMOL plugin. Results can be downloaded for offline viewing with the PyMOL plugin. | ||
== | ==CAVER== | ||
[http://www.caver.cz | [http://www.caver.cz CAVER] is "for analysis and visualization of tunnels and channels in protein structures. '''Tunnels''' are void pathways leading from a cavity buried in a protein core to the surrounding solvent. Unlike tunnels, '''channels''' lead through the protein structure and their both endings are opened to the surrounding solvent." It "enables the analysis of molecular dynamics simulations." | ||
CAVER is available as a Java command line program, a PyMOL plugin, and ''CAVER Analyst''. | |||
Personal experience: '''caver.jar''': Although I use Jmol.jar frequently in macOS 10.14 Mojave (currently with Java 1.8.0_271), I was unable to get caver.jar to start. There is much documentation but nothing specific about macOS. '''caver_analyst2''': I was unable to get this program to start in macOS or Windows 10. An email request for assistence sent to caver (at) caver.cz received no reply. [[User:Eric Martz|Eric Martz]] 18:03, 18 December 2020 (UTC) | |||
==Jmol== | ==Jmol== | ||
