Cavity programs: Difference between revisions
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==Cavities vs. Channels== | ==Cavities vs. Channels== | ||
The programs listed alphabetically below can be | The programs listed alphabetically below can be categorized as follows. | ||
===I. Cavities=== | ===I. Cavities=== | ||
These programs identify any cavities between atoms of the macromolecule, or pockets beneath a smoothed macromolecular surface, that are larger than the probe diameter. '''No starting position''' | These programs identify any cavities between atoms of the macromolecule, or pockets beneath a smoothed macromolecular surface, that are larger than the probe diameter. '''No starting position need be specified'''. | ||
*[[#CASTp|CASTp]] | *[[#CASTp|CASTp]] | ||
*[[#Jmol|Jmol]] Cavities as isosurfaces. | |||
*[[#PACUPP|PACUPP]] Cavities filled with pseudoatoms. | |||
===II. Channels/Tunnels=== | ===II. Channels/Tunnels=== | ||
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*[[#CAVER Web|CAVER Web]] ''Appeared to be '''out of order''' in December, 2020.'' | *[[#CAVER Web|CAVER Web]] ''Appeared to be '''out of order''' in December, 2020.'' | ||
*[[#ChExVis|ChExVis]] Limited to channels with 2 entrances. | *[[#ChExVis|ChExVis]] Limited to channels with 2 entrances. | ||
*[[#MolAxis|MolAxis]] ''Server appeared to be '''out of order''' in December, 2020.'' | |||
*[[#MOLEonline|MOLEonline]] | *[[#MOLEonline|MOLEonline]] | ||
===III. Other=== | |||
*[[#MAP_CHANNELS|MAP_CHANNELS]] for solvent channels in crystals of macromolecules. | |||
==CASTp== | ==CASTp== | ||
