Cavity programs: Difference between revisions
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*[[#MAP_CHANNELS|MAP_CHANNELS]] for solvent channels in crystals of macromolecules. | *[[#MAP_CHANNELS|MAP_CHANNELS]] for solvent channels in crystals of macromolecules. | ||
</td></tr></table> | </td></tr></table> | ||
==AVP== | |||
[http://www.bioinf.org.uk/software/avp/ AVP (Another Void Program): "Voids are defined as | |||
holes in the protein that are not accessible to solvent, but into | |||
which a molecule of a given radius (such as a water) can fit. ... Initially a course grid is used (default 1A), but close to the protein a finer grid (default 0.1A) is | |||
used and off-grid locations are explored." In addition to locating voids, the program assesses packing quality. | |||
==CASTp== | ==CASTp== | ||
