2ewc: Difference between revisions

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<StructureSection load='2ewc' size='340' side='right'caption='[[2ewc]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='2ewc' size='340' side='right'caption='[[2ewc]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2ewc]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_(serotype_1_/_m1_gas) Streptococcus pyogenes (serotype 1 / m1 gas)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EWC FirstGlance]. <br>
<table><tr><td colspan='2'>[[2ewc]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_M1_GAS Streptococcus pyogenes M1 GAS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EWC FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1jd1|1jd1]]</div></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gi&#124;13623057 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160490 Streptococcus pyogenes (serotype 1 / M1 GAS)])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ewc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ewc OCA], [https://pdbe.org/2ewc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ewc RCSB], [https://www.ebi.ac.uk/pdbsum/2ewc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ewc ProSAT], [https://www.topsan.org/Proteins/MCSG/2ewc TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ewc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ewc OCA], [https://pdbe.org/2ewc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ewc RCSB], [https://www.ebi.ac.uk/pdbsum/2ewc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ewc ProSAT], [https://www.topsan.org/Proteins/MCSG/2ewc TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q99XS4_STRP1 Q99XS4_STRP1]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/2ewc_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/2ewc_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Clancy, S]]
[[Category: Streptococcus pyogenes M1 GAS]]
[[Category: Collart, F]]
[[Category: Clancy S]]
[[Category: Joachimiak, A]]
[[Category: Collart F]]
[[Category: Li, H]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Li H]]
[[Category: Nocek, B]]
[[Category: Nocek B]]
[[Category: Cog0251]]
[[Category: Conserved hypothetical protein]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Putative translation initiation inhibitor]]
[[Category: Unknown function]]
[[Category: Yjgf proteins family]]