AlphaFold2 examples from CASP 14: Difference between revisions
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===Third Best Prediction for ORF8=== | ===Third Best Prediction for ORF8=== | ||
The third best prediction was by the Perez Lab, with GDT_TS 33 (see TABLE above). It '''correctly predicted the parallel beta strands formed by the amino and carboxy terminal ends of the chain'''. <scene name='87/875686/3rd_best_orf8/1'>When the 2-stranded parallel beta strands formed by the ends of the chains are aligned, the remainder aligns poorly</scene>. This prediction has '''no disulfide bonds'''. | The third best prediction for ORF8 was by the Perez Lab, with GDT_TS 33 (see TABLE above). It '''correctly predicted the parallel beta strands formed by the amino and carboxy terminal ends of the chain'''. <scene name='87/875686/3rd_best_orf8/1'>When the 2-stranded parallel beta strands formed by the ends of the chains are aligned, the remainder aligns poorly</scene>. This prediction has '''no disulfide bonds'''. | ||
===Top Prediction by an Automated Server=== | |||
Among predictions by automated servers for all ~100 CASP 14 targets, the top ranking server was QUARK from the Yang Zhang group (Univ. Michigan). For ORF8, the Zhang-TBM server made the best server prediction with a '''GDT_TS of 27'''. (The prediction by QUARK was not quite as good, GDT_TS 26.) | |||
===Baker Rosetta Server Prediction for ORF8=== | ===Baker Rosetta Server Prediction for ORF8=== | ||
