AlphaFold2 examples from CASP 14: Difference between revisions
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===Third Best Prediction for ORF8=== | ===Third Best Prediction for ORF8=== | ||
The third best prediction for ORF8 was by the Perez Lab, with GDT_TS 33 (see Table I above). It '''correctly predicted the parallel beta strands formed by the amino and carboxy terminal ends of the chain'''. <scene name='87/875686/3rd_best_orf8/1'>When the 2-stranded parallel beta strands formed by the ends of the chains are superposed, the remainder superposes poorly</scene>. This prediction has '''no disulfide bonds'''. The '''salt bridge''' Arg86:Asp98 is correctly predicted, along with two incorrectly predicted salt bridges. | The third best prediction for ORF8 was by the Perez Lab, with GDT_TS 33 (see Table I above). It '''correctly predicted the parallel beta strands formed by the amino and carboxy terminal ends of the chain'''. <scene name='87/875686/3rd_best_orf8/1'>When the 2-stranded parallel beta strands formed by the ends of the chains are superposed, the remainder superposes poorly</scene><ref name="fragfit">Superposition by Swiss-PdbViewer's ''Explore Fragment Alternate Fits'', which does not use sequence information. Eight intermediate structures were generated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref>. This prediction has '''no disulfide bonds'''. The '''salt bridge''' Arg86:Asp98 is correctly predicted, along with two incorrectly predicted salt bridges. | ||
===Top Prediction by an Automated Server=== | ===Top Prediction by an Automated Server=== | ||
