Calculating GDT TS: Difference between revisions
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GDT_TS can be calculated with the free [http://linum.proteinmodel.org/ AS2TS Server] provided by [http://linum.proteinmodel.org/AS2TS/people/Zemla/ Adam Zemla]<ref name="zemla">PMID: 12824330</ref><ref name="as2ts">PMID: 15980437</ref>. Below are detailed instructions kindly provided by Zemla. | GDT_TS can be calculated with the free [http://linum.proteinmodel.org/ AS2TS Server] provided by [http://linum.proteinmodel.org/AS2TS/people/Zemla/ Adam Zemla]<ref name="zemla">PMID: 12824330</ref><ref name="as2ts">PMID: 15980437</ref>. Below are detailed instructions kindly provided by Zemla. | ||
===Run 1: Superposition=== | |||
You will need to do two runs on the server. The first run produces the best superposition. The second run calculates GDT_TS based on that superposition. | |||
1. Go to the AS2TS server: [http://linum.proteinmodel.org/ linum.proteinmodel.org]. | 1. Go to the AS2TS server: [http://linum.proteinmodel.org/ linum.proteinmodel.org]. | ||
