Calculating GDT TS: Difference between revisions
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5. Caveat: If you let your browser auto-fill the email address slot, make sure to clear any other slots that got auto-filled inadvertently. Otherwise you may get an error message. | 5. Caveat: If you let your browser auto-fill the email address slot, make sure to clear any other slots that got auto-filled inadvertently. Otherwise you may get an error message. | ||
6. | 6. Leaving the parameters at their defaults, press the '''START''' button. | ||
:In the results for Run 1, you may be interested in the '''RMSD''' and '''Seq_Id''' for the superposition deemed optimal by this server. | |||
The '''LGA_S''' value is a structure similarity score for the number of alpha carbons given under '''N'''. | |||
:Caveat: If the first structure is half the length of the second '''reference''' structure, then the maximum possible LGA score is 50%. On the other hand, if the second structure is half the length of the first one, then the maximum possible LGA score is 100%. In our example, the length of 5a2f_A is 218 amino acids, and the length of the reference structure 7jx6_A is 104. Therefore, a score of 100 is not impossible. | |||
==References== | ==References== | ||
<references /> | <references /> | ||
