AlphaFold2 examples from CASP 14: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 40: | Line 40: | ||
| Dali top hit<ref name="nnf">See [[#ORF8 is not a novel fold]].</ref> [[5a2f]] || 53<ref name="gdt_ts" /> || na || 3.2<br>'''1.95''' || 92/92 (100%)<br>'''48/92 (52%)''' || na || na | | Dali top hit<ref name="nnf">See [[#ORF8 is not a novel fold]].</ref> [[5a2f]] || 53<ref name="gdt_ts" /> || na || 3.2<br>'''1.95''' || 92/92 (100%)<br>'''48/92 (52%)''' || na || na | ||
|- | |- | ||
| 2nd Best* || 43 || 0 || 5.33<br>'''1.71''' || 92/92 (100%)<br>'''38/92 (41%)''' || 6.54<br>'''5.86''' || 747/748 (100%)<br>'''324/748 (43%)''' | | 2nd Best* || 43 || 0 || 5.33<br>'''<span class="text-gray">1.71</span>''' || 92/92 (100%)<br>'''<span class="text-gray">38/92 (41%)</span>''' || 6.54<br>'''<span class="text-gray">5.86</span>''' || 747/748 (100%)<br>'''<span class="text-gray">324/748 (43%)</span)''' | ||
|- | |- | ||
| 3rd Best§ || 33 || 0 || 13.37<br>† || 92/92 (100%)<br>† || 14.50<br>† || 747/748 (100%)<br>† | | 3rd Best§ || 33 || 0 || 13.37<br>† || 92/92 (100%)<br>† || 14.50<br>† || 747/748 (100%)<br>† | ||
| Line 50: | Line 50: | ||
:Superpositions by "Magic Fit"<ref name="mf">Superposition by Swiss-PdbViewer's ''magic fit''. This is a sequence alignment-guided structural superposition. Eight intermediate structures were generated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref> of Swiss-PdbViewer 4.1.<br> | :Superpositions by "Magic Fit"<ref name="mf">Superposition by Swiss-PdbViewer's ''magic fit''. This is a sequence alignment-guided structural superposition. Eight intermediate structures were generated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref> of Swiss-PdbViewer 4.1.<br> | ||
:'''Superpositions by "Iterative Magic Fit"<ref name="imf" /> of Swiss-PdbViewer 4.1.'''<br> | :'''Superpositions by "Iterative Magic Fit"<ref name="imf" /> of Swiss-PdbViewer 4.1.'''<br> | ||
:<span class="text-gray">Superpositions involving less than 50% of each structure.</span><br> | |||
:na: Not Applicable. | :na: Not Applicable. | ||
:*Second best: Group of Xian Ming Pan, Tsinghua University, Beijing.<br> | :*Second best: Group of Xian Ming Pan, Tsinghua University, Beijing.<br> | ||