AlphaFold2 examples from CASP 14: Difference between revisions

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ConfirmAccount, Editor, Print3D, Tester, Bureaucrats, journal, Administrators
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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, Bureaucrats, journal, Administrators
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| AlphaFold2 || 88 || 1.68<br>'''0.98''' || 404/404 (100%)<br>'''368/404 (91%)''' || 2.28<br>'''<span class="text-gray">1.01</span>''' || 3157/3157 (100%)<br>'''<span class="text-gray">1472/3157 (47%)</span>'''
| AlphaFold2 || 88 || 1.68<br>'''0.98''' || 404/404 (100%)<br>'''368/404 (91%)''' || 2.28<br>'''<span class="text-gray">1.01</span>''' || 3157/3157 (100%)<br>'''<span class="text-gray">1472/3157 (47%)</span>'''
|-
|-
| 2nd Best&#42 || 63 || 12.8<br>'''<span style="color:#b0b0b0;">1.90</span>''' || 404/404 (100%)<br>'''<span style="color:#b0b0b0;">52/404 (13%)</span>''' || 13.4<br>'''<span style="color:#b0b0b0;">2.18</span>''' || 3157/3157 (100%)<br>'''<span style="color:#b0b0b0;">252/3157 (8%)</span>'''
| 2nd Best* || 63 || 12.8<br>'''<span style="color:#b0b0b0;">1.90</span>''' || 404/404 (100%)<br>'''<span style="color:#b0b0b0;">52/404 (13%)</span>''' || 13.4<br>'''<span style="color:#b0b0b0;">2.18</span>''' || 3157/3157 (100%)<br>'''<span style="color:#b0b0b0;">252/3157 (8%)</span>'''
|-
|-
| Seder§ || 53 || 12.3<br>'''<span style="color:#b0b0b0;">1.90</span>''' || 404/404 (100%)<br>'''<span style="color:#b0b0b0;">88/404 (22%)</span>''' || 12.7<br>'''<span style="color:#b0b0b0;">1.64</span>''' || 3157/3157 (100%)<br>'''<span style="color:#b0b0b0;">804/3157 (25%)</span>'''
| Seder§ || 53 || 12.3<br>'''<span style="color:#b0b0b0;">1.90</span>''' || 404/404 (100%)<br>'''<span style="color:#b0b0b0;">88/404 (22%)</span>''' || 12.7<br>'''<span style="color:#b0b0b0;">1.64†</span>''' || 3157/3157 (100%)<br>'''<span style="color:#b0b0b0;">804†/3157 (25%)</span>'''
|}
|}
:Superpositions by "Magic Fit"<ref name="mf" /> of Swiss-PdbViewer 4.1.<br>
:Superpositions by "Magic Fit"<ref name="mf" /> of Swiss-PdbViewer 4.1.<br>
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:&#42;Second best by Seok-refine: Group of Chaok Seok, Seoul National University.<br>
:&#42;Second best by Seok-refine: Group of Chaok Seok, Seoul National University.<br>
:§Prediction by Seder2020 (one of the predictions with GDT_TS 53, arbitrarily 10 less than the 2nd best with GDT_TS 63): Group of Andrzej Kloczkowski, Colombus, Ohio.<br>
:§Prediction by Seder2020 (one of the predictions with GDT_TS 53, arbitrarily 10 less than the 2nd best with GDT_TS 63): Group of Andrzej Kloczkowski, Colombus, Ohio.<br>
:†Close superposition of the three longest alpha helices.


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