Renumbering PDB files: Difference between revisions
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==PDBrenum== | ==PDBrenum== | ||
[http://dunbrack3.fccc.edu/PDBrenum/ PDBrenum] is a server that renumbers atomic coordinate files to match the numberings in the corresponding [http://uniprot.org UniProt] entries. PDBrenum will process both [[PDB file format]] and [[atomic coordinate file|mmCIF file format]] atomic coordinate files. | [http://dunbrack3.fccc.edu/PDBrenum/ PDBrenum] is a server that renumbers atomic coordinate files to match the numberings in the corresponding [http://uniprot.org UniProt] entries. PDBrenum will process both [[PDB file format]] and [[atomic coordinate file|mmCIF file format]] atomic coordinate files. | ||
In the example of [[6ef8]] vs. [[6nef]], after processing by PDBrenum, the cytochromes in both files have sequence numbers 26-432, which is very helpful. Unfortunately, the hemes (HEC) are listed in different orders in the text of the PDB files, so their numbers still don't match. | |||
