2lsm

Solution structure of gpFI C-terminal domain

spinqualitylabelsall models 2lsm Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 2lsm is a 1 chain structure with sequence from Escherichia virus Lambda. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance. Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function FI_LAMBD Stimulates the interaction of procapsid with the terminase-DNA complex, thereby increasing the overall rate of DNA packaging. Before packaging, it likely coats the surface of the procapsid through binding mediated by C-terminal domain. FI presumably dissociates from the capsid once it inflates upon DNA packaging, and is not present in the mature virion. Publication Abstract from PubMed One of the final steps in the morphogenetic pathway of phage lambda is the packaging of a single genome into a preformed empty head structure. In addition to the terminase enzyme, the packaging chaperone, FI protein (gpFI), is required for efficient DNA packaging. In this study, we demonstrate an interaction between gpFI and the major head protein, gpE. Amino acid substitutions in gpFI that reduced the strength of this interaction also decreased the biological activity of gpFI, implying that this head binding activity is essential for the function of gpFI. We also show that gpFI is a two-domain protein, and the C-terminal domain is responsible for the head binding activity. Using nuclear magnetic resonance spectroscopy, we determined the three-dimensional structure of the C-terminal domain and characterized the helical nature of the N-terminal domain. Through structural comparisons, we were able to identify two previously unannotated prophage-encoded proteins with tertiary structures similar to gpFI, although they lack significant pairwise sequence identity. Sequence analysis of these diverse homologues led us to identify related proteins in a variety of myo- and siphophages, revealing that gpFI function has a more highly conserved role in phage morphogenesis than was previously appreciated. Finally, we present a novel model for the mechanism of gpFI chaperone activity in the DNA packaging reaction of phage lambda. Structural and biochemical characterization of phage lambda FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity.,Popovic A, Wu B, Arrowsmith CH, Edwards AM, Davidson AR, Maxwell KL J Biol Chem. 2012 Sep 14;287(38):32085-95. doi: 10.1074/jbc.M112.378349. Epub, 2012 Jul 16. PMID:22801427 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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