1y69: Difference between revisions

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<StructureSection load='1y69' size='340' side='right'caption='[[1y69]], [[Resolution|resolution]] 3.33&Aring;' scene=''>
<StructureSection load='1y69' size='340' side='right'caption='[[1y69]], [[Resolution|resolution]] 3.33&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1y69]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/ ], [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_(strain_atcc_13939_/_dsm_20539_/_jcm_16871_/_lmg_4051_/_nbrc_15346_/_ncimb_9279_/_r1_/_vkm_b-1422) Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 / nbrc 15346 / ncimb 9279 / r1 / vkm b-1422)] and [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_r1 Deinococcus radiodurans r1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y69 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y69 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1y69]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y69 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y69 FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1nkw|1nkw]], [[1ek8|1ek8]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.33&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y69 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y69 OCA], [https://pdbe.org/1y69 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y69 RCSB], [https://www.ebi.ac.uk/pdbsum/1y69 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y69 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y69 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y69 OCA], [https://pdbe.org/1y69 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y69 RCSB], [https://www.ebi.ac.uk/pdbsum/1y69 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y69 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/RL27_DEIRA RL27_DEIRA]] Binds the 5S and 23S rRNAs and also the tRNA in the P site.[HAMAP-Rule:MF_00539] [[https://www.uniprot.org/uniprot/RL16_DEIRA RL16_DEIRA]] Binds the 5S and 23S rRNAs and is also seen to make contacts with the A and P site tRNAs. Interacts with A site tRNA mimics, and is probably one of the key factors, along with a helix of the 23S rRNA, in positioning tRNA stems in the peptidyl-transferase center.[HAMAP-Rule:MF_01342] [[https://www.uniprot.org/uniprot/RRF_ECOLI RRF_ECOLI]] Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.[HAMAP-Rule:MF_00040]  
[https://www.uniprot.org/uniprot/RL16_DEIRA RL16_DEIRA] Binds the 5S and 23S rRNAs and is also seen to make contacts with the A and P site tRNAs. Interacts with A site tRNA mimics, and is probably one of the key factors, along with a helix of the 23S rRNA, in positioning tRNA stems in the peptidyl-transferase center.[HAMAP-Rule:MF_01342]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Deinococcus radiodurans r1]]
[[Category: Deinococcus radiodurans R1]]
[[Category: Escherichia coli K-12]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Albrecht, R]]
[[Category: Albrecht R]]
[[Category: Buerger, J]]
[[Category: Buerger J]]
[[Category: Fucini, P]]
[[Category: Fucini P]]
[[Category: Harms, J M]]
[[Category: Harms JM]]
[[Category: Kobayashi, Y]]
[[Category: Kobayashi Y]]
[[Category: Ohkubo, T]]
[[Category: Ohkubo T]]
[[Category: Schluenzen, F]]
[[Category: Schluenzen F]]
[[Category: Wilson, D N]]
[[Category: Wilson DN]]
[[Category: Yoshida, T]]
[[Category: Yoshida T]]
[[Category: Recycling factor]]
[[Category: Ribosome]]
[[Category: Rrf]]
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