AlphaFold: Difference between revisions

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==Free AlphaFold-based Servers==

[https://github.com/sokrypton/ColabFold#making-protein-folding-accessible-to-all-via-google-colab A Guide to the free RoseTTAFold and AlphaFold 2 Colab notebooks]

A [current video covering an overview, comparison of some of the methods and how people are already extending them, how to submit and interpret, and a tutorial on how to use AlphaFold2 colab](https://www.youtube.com/watch?v=Rfw7thgGTwI) is available.

===RoseTTAFold===

Also in July, 2021, Minkyung Baek and a large team in the [http://www.bakerlab.org/ group of David Baker] published their '''RoseTTAFold''' employing a three-track ~~nework~~, based in part on methods inspired by AlphaFold but not yet fully-detailed by DeepMind. They reported "accuracies approaching those of DeepMind in CASP14"<ref name="baek1">PMID: 34282049</ref>. At the time of its release in July, 2021, it had outperformed all other available structure prediction ''servers''<ref name="baek1" />.

Also in July, 2021, Minkyung Baek and a large team in the [http://www.bakerlab.org/ group of David Baker] published their '''RoseTTAFold''' employing a three-track network, based in part on methods inspired by AlphaFold but not yet fully-detailed by DeepMind. They reported "accuracies approaching those of DeepMind in CASP14"<ref name="baek1">PMID: 34282049</ref>. At the time of its release in July, 2021, it had outperformed all other available structure prediction ''servers''<ref name="baek1" />.

The [http://robetta.bakerlab.org/ RoseTTAFold Server] was made freely available. (Open the ''Structure Prediction'' menu at the top and choose ''Submit''. At the form, be sure to check ''RoseTTAFold'' before submitting your job).

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@@ Line 31: / Line 31: @@
 ==Free AlphaFold-based Servers==
+[https://github.com/sokrypton/ColabFold#making-protein-folding-accessible-to-all-via-google-colab A Guide to the free RoseTTAFold and AlphaFold 2 Colab notebooks]
+A [current video covering an overview, comparison of some of the methods and how people are already extending them, how to submit and interpret, and a tutorial on how to use AlphaFold2 colab](https://www.youtube.com/watch?v=Rfw7thgGTwI) is available.
 ===RoseTTAFold===
-Also in July, 2021, Minkyung Baek and a large team in the [http://www.bakerlab.org/ group of David Baker] published their  '''RoseTTAFold''' employing a three-track nework, based in part on methods inspired by AlphaFold but not yet fully-detailed by DeepMind. They reported "accuracies approaching those of DeepMind in CASP14"<ref name="baek1">PMID: 34282049</ref>. At the time of its release in July, 2021, it had outperformed all other available structure prediction ''servers''<ref name="baek1" />.
+Also in July, 2021, Minkyung Baek and a large team in the [http://www.bakerlab.org/ group of David Baker] published their  '''RoseTTAFold''' employing a three-track network, based in part on methods inspired by AlphaFold but not yet fully-detailed by DeepMind. They reported "accuracies approaching those of DeepMind in CASP14"<ref name="baek1">PMID: 34282049</ref>. At the time of its release in July, 2021, it had outperformed all other available structure prediction ''servers''<ref name="baek1" />.
 The [http://robetta.bakerlab.org/ RoseTTAFold Server] was made freely available. (Open the ''Structure Prediction'' menu at the top and choose ''Submit''. At the form, be sure to check ''RoseTTAFold'' before submitting your job).