Structure superposition tools: Difference between revisions

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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, journal, Administrators
30,118 edits
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None of the above servers does structure superposition of DNA, but  [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] does (''Iterative Magic Fit'').
None of the above servers does structure superposition of DNA, but  [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] does (''Iterative Magic Fit'').


===Multiple chain structural alignment===
===Multiple chain structure superposition===
====Multiple chains in each of two models====
====Multiple chains in each of two models====
CE and FATCAT align only one chain at a time. DaliLite appears to align multiple chains, although the output is confusing and not clearly labeled.  [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] can align multiple chains, including both protein and DNA chains in a single alignment (''Iterative Magic Fit'').  [[#TopMatch|TopMatch]] and [[#TopSearch|TopSearch]] can also align multichain protein assemblies.
CE and FATCAT superpose only one chain at a time. DaliLite appears to superpose multiple chains, although the output is confusing and not clearly labeled.  [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] can superpose multiple chains, including both protein and DNA chains in a single superposition (''Iterative Magic Fit'').  [[#TopMatch|TopMatch]] and [[#TopSearch|TopSearch]] can also superpose multichain protein assemblies.


====One chain vs. many other chains====
====One chain vs. many other chains====
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