Structure superposition tools: Difference between revisions
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Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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*Publication (2005)<ref name="mammoth">PMID: 15849316</ref> | *Publication (2005)<ref name="mammoth">PMID: 15849316</ref> | ||
*Help on server: A little. | *Help on server: A little. | ||
*Does | *Does superposition involve sequence comparison? UNCLEAR. | ||
*Rigid | *Rigid superposition: YES. | ||
*Flexible | *Flexible superposition: NO. | ||
*Multiple | *Multiple superposition: You can download the software to run on linux. | ||
*Structure neighbors (pre-calculated): NO. | *Structure neighbors (pre-calculated): NO. | ||
*Pairwise | *Pairwise superposition including uploaded models: YES | ||
*Visualization: Yes (You can right click on the visualization in JSmol and save the file shown. Also, you can download a script for RasMol that contains PDB coordinates. '''PDB file lacks MODEL/ENDMDL delimiters. PDB file has no chain names. File does not run as a script in Jmol due to REMARK lines that are not legal Jmol commands.''' You can open the downloaded file directly in PyMOL.) | *Visualization: Yes (You can right click on the visualization in JSmol and save the file shown. Also, you can download a script for RasMol that contains PDB coordinates. '''PDB file lacks MODEL/ENDMDL delimiters. PDB file has no chain names. File does not run as a script in Jmol due to REMARK lines that are not legal Jmol commands.''' You can open the downloaded file directly in PyMOL.) | ||
*Color by deviation: '''NO'''. | *Color by deviation: '''NO'''. | ||
*Offered by RCSB? YES | *Offered by RCSB? YES. | ||
===TopMatch=== | ===TopMatch=== | ||
