1f90: Difference between revisions

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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1f90]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F90 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F90 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1f90]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F90 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F90 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f90 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f90 OCA], [https://pdbe.org/1f90 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f90 RCSB], [https://www.ebi.ac.uk/pdbsum/1f90 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f90 ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f90 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f90 OCA], [https://pdbe.org/1f90 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f90 RCSB], [https://www.ebi.ac.uk/pdbsum/1f90 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f90 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f90 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f90 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The three-dimensional structure of the Fab fragment of a monoclonal antibody (LNKB-2) to human interleukin-2 (IL-2) complexed with a synthetic antigenic nonapeptide, Ac-Lys-Pro-Leu-Glu-Glu-Val-Leu-Asn-Leu-OMe, has been determined at 3.0 A resolution. In the structure, four out of the six hypervariable loops of the Fab (complementarity determining regions [CDRs] L1, H1, H2, and H3) are involved in peptide association through hydrogen bonding, salt bridge formation, and hydrophobic interactions. The Tyr residues in the Fab antigen binding site play a major role in antigen-antibody recognition. The structures of the complexed and uncomplexed Fab were compared. In the antigen binding site the CDR-L1 loop of the antibody shows the largest structural changes upon peptide binding. The peptide adopts a mostly alpha-helical conformation similar to that in the epitope fragment 64-72 of the IL-2 antigen. The side chains of residues Leu 66, Val 69, and Leu 70, which are shielded internally in the IL-2 structure, are involved in interactions with the Fab in the complex studied. This indicates that antibody-antigen complexation involves a significant rearrangement of the epitope-containing region of the IL-2 with retention of the alpha-helical character of the epitope fragment.
Crystal structure of an anti-interleukin-2 monoclonal antibody Fab complexed with an antigenic nonapeptide.,Afonin PV, Fokin AV, Tsygannik IN, Mikhailova IY, Onoprienko LV, Mikhaleva II, Ivanov VT, Mareeva TY, Nesmeyanov VA, Li N, Pangborn WA, Duax WL, Pletnev VZ Protein Sci. 2001 Aug;10(8):1514-21. PMID:11468348<ref>PMID:11468348</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1f90" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Afonin, P V]]
[[Category: Afonin PV]]
[[Category: Duax, W L]]
[[Category: Duax WL]]
[[Category: Fokin, A V]]
[[Category: Fokin AV]]
[[Category: Ivanov, V T]]
[[Category: Ivanov VT]]
[[Category: Li, N]]
[[Category: Li N]]
[[Category: Mareeva, T Y]]
[[Category: Mareeva TY]]
[[Category: Mikhailova, I Y]]
[[Category: Mikhailova IY]]
[[Category: Mikhaleva, I I]]
[[Category: Mikhaleva II]]
[[Category: Nesmeyanov, V A]]
[[Category: Nesmeyanov VA]]
[[Category: Onoprienko, L V]]
[[Category: Onoprienko LV]]
[[Category: Pletnev, V Z]]
[[Category: Pletnev VZ]]
[[Category: Tsigannik, I N]]
[[Category: Tsigannik IN]]
[[Category: Antigen-binding fragment]]
[[Category: Antigenic peptide]]
[[Category: Immune system]]
[[Category: Interleukin-2]]
[[Category: Monoclonal antibody]]

Revision as of 10:11, 20 March 2024

FAB FRAGMENT OF MONOCLONAL ANTIBODY (LNKB-2) AGAINST HUMAN INTERLEUKIN-2 IN COMPLEX WITH ANTIGENIC PEPTIDE

1f90, resolution 2.60Å

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