How to predict structures with AlphaFold: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
||
| Line 31: | Line 31: | ||
Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed. | Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed. | ||
Each predicted model has an average estimated reliability (pLDDT). >90 is likely accurate; <70 is low confidence. For more about interpreting these values, please see the [https://alphafold.ebi.ac.uk/faq AlphaFold Database FAQ]. | |||
You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file. | You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file. | ||