How to predict structures with AlphaFold: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs)
Eric Martz (talk | contribs)
Line 31: Line 31:


Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed.
Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed.
===Estimated Reliability===


Each predicted model has an average estimated reliability (pLDDT). >90 is likely accurate; <70 is low confidence. For more about interpreting these values, please see the [https://alphafold.ebi.ac.uk/faq AlphaFold Database FAQ].
Each predicted model has an average estimated reliability (pLDDT). >90 is likely accurate; <70 is low confidence. For more about interpreting these values, please see the [https://alphafold.ebi.ac.uk/faq AlphaFold Database FAQ].
Each residue has an estimated reliability of its position (0-100) in the PDB temperature


[[FirstGlance in Jmol]] version 3.7 (when released) will automatically color uploaded AlphaFold models by estimated reliability per residue.
[[FirstGlance in Jmol]] version 3.7 (when released) will automatically color uploaded AlphaFold models by estimated reliability per residue.