How to predict structures with AlphaFold: Difference between revisions
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6. Open the Runtime menu at the very top of the page, and select '''Run all'''. | 6. Open the Runtime menu at the very top of the page, and select '''Run all'''. | ||
==Downloading Results== | |||
{{Font color|red|Do NOT close your AlphaFold2_advanced browser tab until the job is completed.}} It appears that you will lose your job if you close the browser tab. You will be warned if you inadvertently try. | |||
When the job is completed, a dialog to download a zip file will appear automatically. (Sometimes you will be asked for permission to enable download first.) | |||
==Interpreting Results== | ==Interpreting Results== | ||
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Also notice that, in this case, all 3 models have low confidence (pLDDT < 70), and are of questionable value. | Also notice that, in this case, all 3 models have low confidence (pLDDT < 70), and are of questionable value. | ||
== | ==Paying for Colab Pro== | ||
When I submitted a new job, after completing several large jobs (>500 residues), I was informed that a GPU could not be assigned. My access was temporarily restricted because of the resources I had recently consumed. | |||
Colab Pro | In October, 2021, a subscription to [https://colab.research.google.com/signup/pricing Colab Pro] was US $10/month. After I subscribed, all jobs I have submitted have been processed without complaint. | ||
==References and Notes== | ==References and Notes== | ||
<references /> | <references /> | ||