How to predict structures with AlphaFold: Difference between revisions
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4. Enter a jobname in the slot below the sequence slot. The results.zip filename will begin with this jobname (but none of its contents include the jobname). | 4. Enter a jobname in the slot below the sequence slot. The results.zip filename will begin with this jobname (but none of its contents include the jobname). | ||
<br><br> | <br><br> | ||
5. Scroll down to the | 5. Scroll down to the section titled ''run alphafold'', subsection ''Sampling options'': | ||
* '''num_models''', the number of models to be predicted, is 5 by default. You could reduce this to 3 if you are in a hurry. | * '''num_models''', the number of models to be predicted, is 5 by default. You could reduce this to 3 if you are in a hurry. | ||
* '''max_recycles''': Set this to 48 (or at least 12). The actual number of "recycles" performed will stop when the model has converged to the specified tolerance. The default of 3 is often not enough for an optimal result. | * '''max_recycles''': Set this to 48 (or at least 12). The actual number of "recycles" performed will stop when the model has converged to the specified tolerance. The default of 3 is often not enough for an optimal result. | ||
