How to predict structures with AlphaFold: Difference between revisions
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In July, 2021, DeepMind released [[Alphafold#AlphaFold_published_July_2021|AlphaFold as open source code]]. Subsequently, [[Alphafold#Free_AlphaFold-based_Servers|several Colabs became available]] offering '''free''' structure prediction for user-submitted protein sequences. These Google Colabs (collaboratories)<ref name="colabfaq">[https://research.google.com/colaboratory/faq.html Collaboratory FAQ] at Google.</ref>. enable users to submit sequences via web browser, executing the code in the Google cloud, using space private to each user, returning predicted structures. | In July, 2021, DeepMind released [[Alphafold#AlphaFold_published_July_2021|AlphaFold as open source code]]. Subsequently, [[Alphafold#Free_AlphaFold-based_Servers|several Colabs became available]] offering '''free''' structure prediction for user-submitted protein sequences. These Google Colabs (collaboratories)<ref name="colabfaq">[https://research.google.com/colaboratory/faq.html Collaboratory FAQ] at Google.</ref>. enable users to submit sequences via web browser, executing the code in the Google cloud, using space private to each user, returning predicted structures. | ||
Below are instructions for beginners who wish to predict structures. We recommend the "advanced" Colab by [https://www.biorxiv.org/content/10.1101/2021.08.15.456425v1 Sergey Ovchinnikov, Milot Mirdita and Martin Steinegger]. | Below are instructions for beginners who wish to predict structures. We recommend the "advanced" Colab by [https://www.biorxiv.org/content/10.1101/2021.08.15.456425v1 Sergey Ovchinnikov, Milot Mirdita and Martin Steinegger]. Some of the options recommended below were gleaned from the [https://www.youtube.com/watch?v=Rfw7thgGTwI 1 hour 46 minute video of presentations by Sergey Ovchinnikov and Martin Steinegger] (August, 2021) for the Boston Protein Design and Modeling Club | ||
hosted by Chris Bahl. | |||
==Submitting A Sequence== | ==Submitting A Sequence== | ||
