7bim: Difference between revisions

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<StructureSection load='7bim' size='340' side='right'caption='[[7bim]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
<StructureSection load='7bim' size='340' side='right'caption='[[7bim]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[7bim]] is a 36 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BIM FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BIM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7a1t|7a1t]], [[7bas|7bas]], [[7bat|7bat]], [[7bau|7bau]], [[7bav|7bav]], [[7baw|7baw]]</div></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bim OCA], [https://pdbe.org/7bim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bim RCSB], [https://www.ebi.ac.uk/pdbsum/7bim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bim ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bim OCA], [https://pdbe.org/7bim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bim RCSB], [https://www.ebi.ac.uk/pdbsum/7bim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bim ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The rational design of linear peptides that assemble controllably and predictably in water is challenging. Short sequences must encode unique target structures and avoid alternative states. However, the non-covalent forces that stabilize and discriminate between states are weak. Nonetheless, for alpha-helical coiled-coil assemblies considerable progress has been made in rational de novo design. In these, sequence repeats of nominally hydrophobic (h) and polar (p) residues, hpphppp, direct the assembly of amphipathic helices into dimeric to tetrameric bundles. Expanding this pattern to hpphhph can produce larger alpha-helical barrels. Here, we show that pentameric to nonameric barrels are accessed by varying the residue at one of the h sites. In peptides with four L/I-K-E-I-A-x-Z repeats, decreasing the size of Z from threonine to serine to alanine to glycine gives progressively larger oligomers. X-ray crystal structures of the resulting alpha-helical barrels rationalize this: side chains at Z point directly into the helical interfaces, and smaller residues allow closer helix contacts and larger assemblies.
Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.,Dawson WM, Martin FJO, Rhys GG, Shelley KL, Brady RL, Woolfson DN Chem Sci. 2021 Apr 13;12(20):6923-6928. doi: 10.1039/d1sc00460c. eCollection 2021, May 26. PMID:34745518<ref>PMID:34745518</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7bim" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Brady, R L]]
[[Category: Brady RL]]
[[Category: Dawson, W M]]
[[Category: Dawson WM]]
[[Category: Rhys, G G]]
[[Category: Rhys GG]]
[[Category: Shelley, K L]]
[[Category: Shelley KL]]
[[Category: Woolfson, D N]]
[[Category: Woolfson DN]]
[[Category: Alpha-helical barrel]]
[[Category: Coiled coil]]
[[Category: De novo protein]]
[[Category: Nonamer]]
[[Category: Synthetic]]

Latest revision as of 10:53, 23 October 2024

A de novo designed nonameric coiled coil, CC-Type2-(GgLaId)4

7bim, resolution 1.64Å

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